Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3392 ATGCCTTCCCTCTCCGAAGCCTTTCGAGGCCACCCCGTGTACCTTCACCAGAAGCACCCCGACTTCAACTCCCTACAAGAACTCCCCGATTCTTACGCTTGGTCCCAACCCGAAGATGACCATCACACGAACGCTTGCCCTTCCAATGATTCCACCGTCCCCGTCATCGATTTCAACGACCCAAATGCTCCAAACCTCGTAGGCCATGCATGCAAAACATGGGGCGTGTTCCAAGTGGTAAACCACGGCATCCCCACGAGCCTCTTCAGTGACATTCAGAGGGCCACACTCGCGCTGTTCTCCCTTCCCCTTCACCAAAAGCTCAAAGCAGCTCGCTCACCCGACGGCGTTTCCGGCTATGGCCGCGCTCGCATCTCCTCCTTCTTCCCCAAACTCATGTGGTCTGAGTGCTTCACAATTCTTGACTCCCCTCTTGACCTTTTCCTCCAACTCTGGCCACAAGACTATGCTAAATACTGTGATATTTTCGTGGAATATGAAGCAGCCATGGAAAAGCTGGCAGGGAAGCTAATGTGCCTCGTGTTGGCTTCTCTTGGTATTTCAAAGGAAGACATTACATGGGCTGGCCCGAGAGGAGAATTCAACGGGGCTTGTGCGGCCTTGCATTTGAATTCTTACCCGAGTTGCCCGGATCCGGATCGGGCCATGGGTCTGGCCCCGCACACGGACTCCACTCTCCTCACAATCCTGCACCAAAACAATGTCAGTGGGCTTCAGGTTCTTAAGGAAGGTGACGGCTGGGTGGCGGTGCCGCCGCTTCCCGGAGGGCTCGTGATCAACATCGGCGATCTGCTCCACATTTTGTCAAACGGGTTGTACCCGAGTGTGCTCCATCGGGTGCGGGTGAACCACACCCGGCAGCGGTTCTCGGTTGCTTATTTATATGGGCCCCCAGCAAATGTCCAAATCAGTCCACATGTAAAATTAGTAGGCCCAACTAGGCCCGCTATTTATCGACCGGTGACTTGGAACGAGTACCTTGGCACCAAAGCAAAGCATTTTAATAAGGCTCTCTCATTGGTTCGGCTTCGTGCATCTATTAACGGTTTGTTTGATGTAAACGAGGATCACAATAGCGACTTTCAAGTGGGCTAG 1116 0.5332 MPSLSEAFRGHPVYLHQKHPDFNSLQELPDSYAWSQPEDDHHTNACPSNDSTVPVIDFNDPNAPNLVGHACKTWGVFQVVNHGIPTSLFSDIQRATLALFSLPLHQKLKAARSPDGVSGYGRARISSFFPKLMWSECFTILDSPLDLFLQLWPQDYAKYCDIFVEYEAAMEKLAGKLMCLVLASLGISKEDITWAGPRGEFNGACAALHLNSYPSCPDPDRAMGLAPHTDSTLLTILHQNNVSGLQVLKEGDGWVAVPPLPGGLVINIGDLLHILSNGLYPSVLHRVRVNHTRQRFSVAYLYGPPANVQISPHVKLVGPTRPAIYRPVTWNEYLGTKAKHFNKALSLVRLRASINGLFDVNEDHNSDFQVG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3392 371 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 203 304 IPR005123 -
Ssu4g3392 371 SUPERFAMILY Clavaminate synthase-like 15 341 - -
Ssu4g3392 371 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 362 - -
Ssu4g3392 371 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 362 - -
Ssu4g3392 371 PRINTS Isopenicillin N synthase signature 67 84 - -
Ssu4g3392 371 PRINTS Isopenicillin N synthase signature 264 290 - -
Ssu4g3392 371 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 146 IPR026992 -
Ssu4g3392 371 Pfam 2OG-Fe(II) oxygenase superfamily 208 304 IPR044861 -
Ssu4g3392 371 Gene3D - 21 344 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3392 Ssu-Chr4 84491597 84493383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3392 37 345 Glycosyltransferase AT5G59530 30.000 7.88e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3392 K04124 - gmx:100794180 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3392 4 84491597 84493383 Ssu4g3392 4 84491597 84493383 ECH
Ssu8g0164 8 2477879 2479444 Ssu4g3392 4 84491597 84493383 PCT