Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0154 ATGAAGAAGCAATGCTTCGAAGAATCAGAGACAAACGTTGGATCCTGGGAATGTTGGTTCGACGATGCATGCATCGTTGACATGGATTACTTTGTGAAGACCCTTTCAAGCATCAAACAGAAAGGCGTTCGTGCAGATTTGATTGGTTCCATCATCACTCATTACGCCTCCATATGGCTTCCTGACCTCTCTGCCTCTGCTGAAAAGGGTGTCAGTGTCACCACCGCTCACTTCCACTCCCCGGAAAGCGTCACCACTTCGTGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGAGTGTTCTGCCTCCTGAGAAGGATTCTGTCCCATGCAGCTTCCTCCTTCGCCTTCTCAGAACAGCCAACATGGTTCGCGTTGATGTCACTTATAGAGCCGAGCTTGAGAACCGCATTTCGTGGCAGCTCGACCAAGCTTCTCTCATAGAGCTCTTGATACCCTCCTTCAGCCACACGTGTGGGACTCTCCTGGATGTTGAGCTTGTCCTCAGGTGGCCAAGTTGGTTGATTGCTATCCTTGCTGAGGCTGCTGTGGATGCCAATTTGACCTTGTCTGAGTTCCTTGCACTTGCTGGAGCCCTTCCAAGCCATGCAAGAGCCACAGATGATGGCTTGTATCGAGCCATTGACACTTATCTGAAAGCACATCCAGGTGTGTCGAAGCAAGAAAGGAAGGGCCTGTGTAGGCTGCTTGATAGCCGGAAACTCACACCAGAGGCCTCACTTCATGCAGCTCAAAACGAACGGCTGCCTGTCAGAGCTGTGATTCAGGTGCTCTTCTCTGAACAAACCAAACTCAACCGCCACATAGATTGGAGTAGTTCCTTCAGTGGCTTGAGGAGCCCGAACGGAGGGCTCGACCCACCAACACGATGTCTTTCAAAGCGTGAAATGAATGCTCAGCAAATGGAGATAAGGAAGCTGAAGGAAGATGTCTACAGACTGCAGTGCCAGTTAAATGCCATGCAAGTGCAGATGGAGAGGTTGGCGGCGAAGAAGAAGGGCTTATTCAAATGGAAGAAGTTTGGAATGCCTACGTTTGGCAGAAGTGTGGCAGAGGTggagaaaattgaagaagaggaggaggcTGAAAGGGAAGTTGGGTTTGGAATGCAAACGCCTATGGACATGAAAACCAGTCTGGTCAAAAGTAGGACTCCCCTCAAGTGGAGGAAATCTATGTCCTGA 1206 0.4884 MKKQCFEESETNVGSWECWFDDACIVDMDYFVKTLSSIKQKGVRADLIGSIITHYASIWLPDLSASAEKGVSVTTAHFHSPESVTTSWMKKRFFVETLVSVLPPEKDSVPCSFLLRLLRTANMVRVDVTYRAELENRISWQLDQASLIELLIPSFSHTCGTLLDVELVLRWPSWLIAILAEAAVDANLTLSEFLALAGALPSHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLLDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQTKLNRHIDWSSSFSGLRSPNGGLDPPTRCLSKREMNAQQMEIRKLKEDVYRLQCQLNAMQVQMERLAAKKKGLFKWKKFGMPTFGRSVAEVEKIEEEEEAEREVGFGMQTPMDMKTSLVKSRTPLKWRKSMS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0154 401 MobiDBLite consensus disorder prediction 370 401 - -
Ssu8g0154 401 ProSiteProfiles NPH3 domain profile. 17 271 IPR027356 -
Ssu8g0154 401 Coils Coil 304 331 - -
Ssu8g0154 401 Pfam NPH3 family 18 170 IPR027356 -
Ssu8g0154 401 Pfam NPH3 family 179 247 IPR027356 -
Ssu8g0154 401 PANTHER OS12G0117600 PROTEIN 15 171 IPR043454 -
Ssu8g0154 401 PANTHER OS12G0117600 PROTEIN 178 401 IPR043454 -
Ssu8g0154 401 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 15 171 - -
Ssu8g0154 401 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 178 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0154 Ssu-Chr8 2306861 2308940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0154 19 272 EF-hand Containing Proteins AT3G44820 32.226 9.50e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0154 - - gmx:100777820 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0154 8 2306861 2308940 Ssu8g0154 8 2306861 2308940 ECH
Ssu8g0154 8 2306861 2308940 Ssu4g3399 4 84592771 84595412 PCT