Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3399 ATGAGGAAGCAATCCTATCCAGACCCACTCACCTTCCAAGCAAAATCGCCATCCCAATTCTCCTCCGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGACTACTTCGTGAAGACCCTTTCTGGCATCAAGGCCAAGGGCGTTCGCGCAGACCTCGTTGGCTCCATCATCACACACTACGCCTCCAAATGGCTCCCTGACCTCTCTGCGGGGGACATGGCTGAAAAGGGTCTGACACAATTTGAGGAATCGCCCGAAAGCGTGACGGCTTCATGGATTAAGAAGAGGTTCTTTGTGGAGACCTTGGTGGGTGTTCTGCCTCCTGAAAAGGATGCCATTCCATGCAACTTCCTGCTTCGGCTTCTGAGGACTGCCAACATGGTTGGGGTTGAGGCTGCCTACAGGCAGGAGCTTGAGAATCGTATTTCGTGGCAGTTGGACCAGGCTTCGTTGAAGGAGTTGGTGATTCCCTCTTTCAGCCACACTTGTGGGACTCTCTTGGATGTTGAGCTCGTCATTAGGCTGGTTAAGAGGTTCGTGAGTTTGGACAGTGAGGGAGCGAAGAGCGTTGCTTCTCTGGTTAAGGTGGCTAAGTTGGTTGATTCCTACCTCGCTGAGGCTGCTGTGGATGCCAATTTGTGCTTGTCAGATTTCGTTACCCTTGCGGGAGCTCTTCCAAGCCATGCAAGAGCAACGGATGATGGCTTGTACAGAGCCATTGATACGTATCTTAAAGCGCATCCAGGTGTGTCGAAGCAAGAAAGGAAGGGTCTGTGTAGGCTAATCGACAGCCGAAAACTAACCCCAGAGGCGTCACTTCACGCAGCACAAAACGAACGGTTCCCGGTGAGAGCAGTGATCCAGGTGCTGCTCTCCGAGCAGAGCAAGCTGAACCGCCACGTGGACTGGAGCGGGTCGTTGGTGAGTGGGGCGAGAAGCCCCGGCGGGTTGGACTTGCCCACGCGGTGTCTGTCGAAGCGCGAGGTGAACGCCCAACAGCTGGAGATAAGGAGGCTGAAGGAAGACGTGCACAGGCTGCAGAGCCAGTGCAGCGCCATGCAGGCGCAGATGGAGAGGATGGCGGAGAAGAAGAAGGGCTTCTTCAAGTGGAAGAAGCTTGCGTTTGGCATAGGGGAGCACCATAAAATGGAACAAGTGCTTGAAGGGAATGGATACGGAAAGTACACGCCTGCGGACGTGAAAACCAGGTTGGTCAACGTCAAAGGTAGTAGTAGGAATACTCACAAGTGGAGGAAATCCTTGTCCTAA 1272 0.5362 MRKQSYPDPLTFQAKSPSQFSSECWFDDACILDMDYFVKTLSGIKAKGVRADLVGSIITHYASKWLPDLSAGDMAEKGLTQFEESPESVTASWIKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEAAYRQELENRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFVSLDSEGAKSVASLVKVAKLVDSYLAEAAVDANLCLSDFVTLAGALPSHARATDDGLYRAIDTYLKAHPGVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLSEQSKLNRHVDWSGSLVSGARSPGGLDLPTRCLSKREVNAQQLEIRRLKEDVHRLQSQCSAMQAQMERMAEKKKGFFKWKKLAFGIGEHHKMEQVLEGNGYGKYTPADVKTRLVNVKGSSRNTHKWRKSLS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3399 423 ProSiteProfiles NPH3 domain profile. 23 297 IPR027356 -
Ssu4g3399 423 PANTHER OS12G0117600 PROTEIN 3 423 IPR043454 -
Ssu4g3399 423 Coils Coil 330 364 - -
Ssu4g3399 423 Pfam NPH3 family 24 273 IPR027356 -
Ssu4g3399 423 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 3 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3399 Ssu-Chr4 84592771 84595412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3399 22 298 EF-hand Containing Proteins AT3G44820 36.093 8.81e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3399 - - gmx:100777676 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3399 4 84592771 84595412 Ssu4g3399 4 84592771 84595412 ECH
Ssu8g0154 8 2306861 2308940 Ssu4g3399 4 84592771 84595412 PCT