Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0130 aTGGAAGGCATAACGGAGGGAGTGAACAACATCAACATCTCCGATTCGTATAAGAAGAATCGCATTCAGGTCTCTAACACCAAGAAGCCCCTCTTCTTTTACGTTAATCTCGCCAAGAGATATATGCAACAGCATAACGAGGTCGAGCTCTCAGCGCTAGGAATGGCTATTGCCACAGTGGTAACTGTTgctgaaattttgaaaaacaatggACTTGCTGTTGAAAAGAAAATCATGACATCAACTGTTGACATAAAGGATGATTCTAGAGGTAGACCTGTCCAAAAGGCCAAGATTGAAATAGTACTTGGGAAGACAGCAAACTTCGATGAGTTGATGGCTGCTGCGGCTGCTGAAGATGGTGAAAATGGAGACATTGAAGAGCAGAGCGCATGA 396 0.4167 MEGITEGVNNINISDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAAAEDGENGDIEEQSA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0130 131 SUPERFAMILY AlbA-like 19 114 IPR036882 GO:0003676
Ssu8g0130 131 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 1 125 IPR014560 -
Ssu8g0130 131 PANTHER - 1 125 - -
Ssu8g0130 131 PIRSF UCP030333_Alba 1 131 IPR014560 -
Ssu8g0130 131 Pfam Alba 20 75 IPR002775 GO:0003676
Ssu8g0130 131 Gene3D - 18 129 IPR036882 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0130 Ssu-Chr8 2009358 2011951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0130 - - gmx:100527472 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0130 8 2009358 2011951 Ssu8g0130 8 2009358 2011951 ECH
Ssu8g0130 8 2009358 2011951 Ssu4g3422 4 84844294 84847720 PCT