Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3422 ATGGAAGCAATCACTGAGGGAGTGAACAACATCAACATCTCCGATTCTTATAAGAAGAATCGCATTCAGGTCTCCAACACCAAAAAGCCCCTCTTCTTCTACGTTAATCTCGCCAAGAGGTATATGCAACAGCATAATGAGGTTGAGCTCTCAGCACTAGGAATGGCTATTGCTACGGTGGTTACTGTTGCTGAAATCTTGAAAAACAATGGGCTTGCTGTTGAAAAGAAAATCATGACATCAACAGTTGACATCAAAGATGATTCTAGAGGTAGACCGGTCCAAAAGGCCAAGattGAAATATTACTGGGGAAGACTGCAAACTTTGATGAGTTGATGGCTGCCGCGGCTGCAGAAGATGGTGAAAATGGAGATATTGAAGAGCACACTGCATAA 396 0.4268 MEAITEGVNNINISDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLGKTANFDELMAAAAAEDGENGDIEEHTA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3422 131 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 1 125 IPR014560 -
Ssu4g3422 131 SUPERFAMILY AlbA-like 19 114 IPR036882 GO:0003676
Ssu4g3422 131 PIRSF UCP030333_Alba 1 131 IPR014560 -
Ssu4g3422 131 Pfam Alba 20 75 IPR002775 GO:0003676
Ssu4g3422 131 Gene3D - 18 128 IPR036882 GO:0003676
Ssu4g3422 131 PANTHER - 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3422 Ssu-Chr4 84844294 84847720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3422 - - gmx:100305539 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3422 4 84844294 84847720 Ssu4g3422 4 84844294 84847720 ECH
Ssu8g0130 8 2009358 2011951 Ssu4g3422 4 84844294 84847720 PCT