Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0111 ATGCTTGGTTTCGGTGCGGACCTCTTGTGGGCCGACATGAACCGCCTCCTCGCCTTTCTTTTCCACCAGGGAGTGCTGGATGAGCAATTTTTGCAGCTTCAACAGCTGCAAGATGAGGCCTCCCCTAACTTCGTCTCTGAGGTCATCAACATTTATTTCCACGAGTCCGAGAAGCTACTCAGGAATCTCAGAGGATTGctAATGGAAAGGGAGTTATCGGACTACAAGAAAATGGGCACCCATTTGAATCAGTTCATGGGTAGCAGTTCAAGCATTGGTGCCAAGAGAGTCACAAACGTCTGCGTTGCCTTTCGTGCTGATACTGAGCAGAGCAACCGTGCTGGATGCTTGCGGGCGTTGGAGATGCTGGAGCATGAATATTGCTATCTGAAGAACAAATTGCACGAACTATTCCAAATAGAGCAGCAACGTGCTTTGGTAGCAGGAGTGAGATACCCTGTGCAGAATCAATAG 474 0.4873 MLGFGADLLWADMNRLLAFLFHQGVLDEQFLQLQQLQDEASPNFVSEVINIYFHESEKLLRNLRGLLMERELSDYKKMGTHLNQFMGSSSSIGAKRVTNVCVAFRADTEQSNRAGCLRALEMLEHEYCYLKNKLHELFQIEQQRALVAGVRYPVQNQ 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0111 157 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 41 137 IPR008207 GO:0000160
Ssu8g0111 157 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 9 143 IPR036641 GO:0000160
Ssu8g0111 157 PANTHER - 1 152 IPR045871 GO:0000160|GO:0009927|GO:0043424
Ssu8g0111 157 Pfam Hpt domain 47 121 IPR008207 GO:0000160
Ssu8g0111 157 Gene3D HPT domain 5 155 IPR036641 GO:0000160
Ssu8g0111 157 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 6 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0111 Ssu-Chr8 1812441 1813954 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0111 K14490 - gmx:100814937 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0111 8 1812441 1813954 Ssu8g0111 8 1812441 1813954 ECH
Ssu8g0111 8 1812441 1813954 Ssu4g3441 4 85055430 85057003 PCT