Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3441 ATGCTTGGTTTGGGTGCGGACCTCTTGTGGGCCGACATGAACCGCCTCCTCGCCTTTCTCTTCCACCAGGGAGTGTTGGATGAGCAATTCTTGCAGCTTCAGCAGCTGCAGGATGAGACCTCCCCAAACTTCGTCTCCGAGGTTGTCAACATTTATTTCCACGAATCCGAAAAGCTTCTCAGGAATCTCAGAGCTTTGCTGATGGGGAGGGAGTTTTCGGACTATAAGAAAATGGGGATCCATTTGAATCAGTTCATGGGTAGCAGCTCCAGTATTGGCGCCAAGAGAGTTAGAAACGTCTGCGTTGCCTTTCGTACTGCTACTGAACAGAATAACCGTGCTGGTTGCTTGCGGGCGTTGGAGATGCTGGAGCATGAATATTGCTATCTCAAGAACAAATTGCACGAATTATTCCAAATTGAGCAGCAACGTGCTTTGGCAGCAGGAGTTAGGTACCCGGTGCAGAATTAA 471 0.4904 MLGLGADLLWADMNRLLAFLFHQGVLDEQFLQLQQLQDETSPNFVSEVVNIYFHESEKLLRNLRALLMGREFSDYKKMGIHLNQFMGSSSSIGAKRVRNVCVAFRTATEQNNRAGCLRALEMLEHEYCYLKNKLHELFQIEQQRALAAGVRYPVQN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3441 156 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 41 137 IPR008207 GO:0000160
Ssu4g3441 156 Pfam Hpt domain 47 118 IPR008207 GO:0000160
Ssu4g3441 156 Gene3D HPT domain 4 156 IPR036641 GO:0000160
Ssu4g3441 156 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 6 1 152 - -
Ssu4g3441 156 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 9 143 IPR036641 GO:0000160
Ssu4g3441 156 PANTHER - 1 152 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3441 Ssu-Chr4 85055430 85057003 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3441 K14490 - gmx:100789608 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3441 4 85055430 85057003 Ssu4g3441 4 85055430 85057003 ECH
Ssu8g0111 8 1812441 1813954 Ssu4g3441 4 85055430 85057003 PCT