Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0106 ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTGTTCGAAGAGCTTCCCCCTTCCCCGCCAGTATCCAAGAGGCTCCGCTGTTCCTCCTCCCCAATTcgcctctctcttctctctctcatcGACCACCTTCGCCCTCTCTTCCCTCATATGGATGACCAGGTCCTCGAGAGAGCGCTCCAAGAATGTGGCAATGACCTAGATGCTGCCATCAAGAGCCTCCACGGCCTCTGCTTGGGATCTGCCGAAGATAATTCGCAGACTGCTCCTCCACAACCTGACCCTAATGTCGTCGACGCAGGTACGTTGGAGGAGAATGGGGATGCTTCTGCTTCTGGGGATCAGCCAGCTTCCGGCAATTTTCCGGCTGATGGAGCAGAATGGATTGATTTGTTCGTTAGAGAGATGACGTGTGCTACCAGTGTTGATGATGCCAGAGCTCGTGCTGCTAGACTGCTGGAGGTTCTAGAGAAATCAATCAGTGCACACGCGAGTTCCGGGGCGACAACTCCTCTTCAAAGGGAAAATTTGATGCTGAAGGAGCAAATTGAAGCATTGACTAAggagaaaaattgttttaaaagtgcTTTCAGAATCCAACTTGAGCGTCTTTCTGATTATGAGAGTAAAAACCAAGAGTTGCAGCAGTTGAAGCAGTTGGTGTCTCAATACCAGGAGCAGATCAGAACTCTTGAGGTGAATAACTATGCTTTGCGAATGCATTTGAATCAGGCACAACAGTACAACCCTTTTCCTGGGCGATTCCCTCCTGATGCCTTCTAG 783 0.4725 MSAAVCGSKRSLFEELPPSPPVSKRLRCSSSPIRLSLLSLIDHLRPLFPHMDDQVLERALQECGNDLDAAIKSLHGLCLGSAEDNSQTAPPQPDPNVVDAGTLEENGDASASGDQPASGNFPADGAEWIDLFVREMTCATSVDDARARAARLLEVLEKSISAHASSGATTPLQRENLMLKEQIEALTKEKNCFKSAFRIQLERLSDYESKNQELQQLKQLVSQYQEQIRTLEVNNYALRMHLNQAQQYNPFPGRFPPDAF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0106 260 Pfam CUE domain 40 73 IPR003892 GO:0043130
Ssu8g0106 260 Gene3D - 39 79 - -
Ssu8g0106 260 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 260 - -
Ssu8g0106 260 ProSiteProfiles CUE domain profile. 36 82 IPR003892 GO:0043130
Ssu8g0106 260 SUPERFAMILY UBA-like 39 81 IPR009060 GO:0005515
Ssu8g0106 260 MobiDBLite consensus disorder prediction 82 120 - -
Ssu8g0106 260 Coils Coil 207 234 - -
Ssu8g0106 260 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 260 - -
Ssu8g0106 260 CDD CUE 39 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0106 Ssu-Chr8 1735804 1737732 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0106 - - gmx:100815998 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0106 8 1735804 1737732 Ssu4g3447 4 85115217 85116756 PCT