Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3447 ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAACTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGCTTCCCTCCTCCCTCGTTCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACCTCGTTCTAGAGAGAGCTCTCCAAGAGTGTGGCAATGATATAGATGCTGCCATCAAGCGCCTGAACGAACTTTGCTTGGGAACTGCAGATGGAAATGGAACTGCTGAAGAATCAGAGGTTGTTGTTAATGTGGATGCAGGTAAATTGGAAGACGATGGAAATGGTTCTGTTTCTGAGAACCAGCCTGCTTTGAACAACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTTAGGGAAATGATGGTTGCTACTAGTGTTGACAATGCTAGAGCCCGTGCTGCCAGAATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAGGGCTGAGGCAATGGATGCACTTCAGAAGGTTTTCATGTTATCAACCAAACTCTGA 546 0.4799 MSAAVCGSKRSFFEELPPSPPLSKRLRCSSSPIRFPPPSFIDQLRPLFPHMDDLVLERALQECGNDIDAAIKRLNELCLGTADGNGTAEESEVVVNVDAGKLEDDGNGSVSENQPALNNLPADGAEWIDFFVREMMVATSVDNARARAARMLEVLEKSISERARAEAMDALQKVFMLSTKL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3447 181 CDD CUE 41 74 - -
Ssu4g3447 181 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 176 - -
Ssu4g3447 181 Gene3D - 38 79 - -
Ssu4g3447 181 SUPERFAMILY UBA-like 39 81 IPR009060 GO:0005515
Ssu4g3447 181 ProSiteProfiles CUE domain profile. 36 81 IPR003892 GO:0043130
Ssu4g3447 181 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 176 - -
Ssu4g3447 181 Pfam CUE domain 41 76 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3447 Ssu-Chr4 85115217 85116756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3447 - - gmx:100813137 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3447 4 85115217 85116756 Ssu4g3447 4 85115217 85116756 ECH
Ssu8g0106 8 1735804 1737732 Ssu4g3447 4 85115217 85116756 PCT