Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0092 ATGTCGTCTCTCAGTAGGGAGTTGGTGTTCTTGATCTTGCAGTTTCTTGATGAGGAAAAGTTCAAAGAGACTGTTCACAAgcTTGAGCAGGAGTCTGGGTTTTTCTTTAACAtgaaatattttgaggatgaaGTGCACAATGGTAATTGGGATGAGGTTGAGCGGTACCTTTCTGGTTTTACCAAAGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTACCTGGAGGCATTAGATAAgcATGACCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTCTTTGCCACATTTAATGAAGACCTGTTTAAGGAAATCACCCAGCTTTTGACGTTGGAGAATTTTAGGGAAAACGAACAATTGTCTAAGTATGGTGATACAAAGTCTGCAAGGGCAATCATGTTGGTTGAGCTCAAAAAGTTGATTGAGGCCAATCCTTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTGCGGACTCTGATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGTAAGAATCCACGGCCAAATCCAGatataaaaacactttttgtGGATCACTCATGTGGACAACCAAATGGTGCACGGGCTCCATCACCTGCTAATAATCCACTACTAGGATCGTTACCAAAAGCTGGAGGATTTCCTCCTCTTGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCTGTGCCAGCACCCCTGGCTGGTTGGATGTCAAATCCAACCACTGTAGCACATCCTGCAGTTTCTGGAGGAGCTATAGGTCTTGGTGCACCATCAATCCCTGTTGCTTTGAAGCACCCTAGGACCCCTCCAACTAATCCTTCTGTTGACTATCCATCTGGAGATTCGGATCATGTTTCTAAGAGAACAAGACCACTGGGAATGCCAGATGAGGTAAATCTGCCTGTCAATGTGTTGTCAGCAACATTCCCTGGTCATGGTCATGGTCATGGTCAGGCTTTTAATGCACCTGATGACTTGCCAAAGACTGTCATGCGAACTCTGAACCAAGGCTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAGATATTGCTTCTTGTTGGTACGAATGTGGGGGACATTGCTTTGTGGGAAGTGGGCTCTAGGGAGCGGTTGCTCATGAGGAACTTTAAAGTTTGGGACCTTAGCGCTTGTTCAATGCCCTTTCAGGCTGCTCTTGTCAAAGATCCAGGCGTATCTGTCAATCGTGTGATTTGGAGTCCTGATGGGGCTTTATTCGGAGTTGCTTACTCAAGGCACATTGTTCAGATATATTCTTACCATGGTGGGGATGATGTTCGACAGCATCTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCACCCAAATAAGCAACTATGTGTCATAACCTGTGGTGACGATAAGACCATTAAGGTTTGGGATGCTGCTACTGGTGCTAAACAGTATACTTTCGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGCCCtcattataaagaaaatattcagTTCATCTTTTCAACAGCATTAGATGGAAAGATTAAAGCGTGGCTGTATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGTACAACCATGGCCTATAGTGCTGATGGTACAAGACTCTTTTCATGTGGGACAAGTAAGGAGGGGGAATCTTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACATATCAAGGATTTCGGAAACGATCTTTGGGTGTTGTACAATTTGATACAACCAAAAATCGATATTTGGCTGCAGGCGATGATTTCTCCATTAAATTCTGGGATATGGACAATATTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGGTAGCCCACGTATCCGTTTTAACAAGGATGGAGCTCTTTTAGCTGTTTCTGCAAATGAGAATGGAATTAAAATCTTGGCCAATGCAGATGGTATTCGTTTGTTACGTACATTAGAGAATTCTTTATATGATACATCAAGAACATCAGAAGCTATGACAAAGCCTACAATAAATCCAATTTCAGCTGCCGCTGCAACTAGTGCTGCACTTGCAGAGAGGGCCTCGTCTGTGGTAGCTATTACTGGAATGAATGGGGATGCCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATGCAATGAGAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTATCTGAGAATGTAAGAGTGAACAAGATATCAAGGTTGATATATACTAATTCAGGTAATGCCATTCTGGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAGTGACCGTAATTCATCTAGCAAGGCCACTGCCAGTGTGCAACCCCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGTTCCCTGCTTTGCTCTGTCAAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCTCTGTTCAATATGATGACTTTTAAGACAATGACGACATTCATGCCTCCGCCACCTGCAGCAACTTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGACGATTCTtccattcaaatatataatgtcCGTGTAGATGAGgTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATAACTGGTCTTGCTTTTTCTCATGTATTGAATGTGCTAGTTTCATCCGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGACGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAACTTCCTGCAGGGAGGACTCCAGCACAGACAGATACCCGTGTACAGTTTCATCACGATCAGATCTGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAATGTTTAAAGCAGTGGTTCGCACGAGATTTGACAGCACCAATATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATACCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTGCTTCAAACCTTAGATTACGTTGTCGAATTAATCCTTCTGCTTATCTTTCTGCAAGTGTCAGTTCTAACGTACAACCACTTGTTATTGCTGCGCATCCTCAAGAACCAAATCAGTTTGCTGTAGGACTGTCAGATGGTGGAGTTCATGTCTTTGAGCCCCTTGAGTCTGAAGGCAAATGGGGTGTGCCTCCACCCATTGAGAATGGGTCAACGAGCAATATGGCAGCTACTTCAGTTGGAGCTTCTTCAGATGAAGCGCAGAGATGA 3396 0.4199 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEDLFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPAPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPVALKHPRTPPTNPSVDYPSGDSDHVSKRTRPLGMPDEVNLPVNVLSATFPGHGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQILLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAATSAALAERASSVVAITGMNGDARNLGDVKPRISEECNEKSKIWKLTEINEPSQCRSLKLSENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSSSKATASVQPQLWQPSSGILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKSRFLQLPAGRTPAQTDTRVQFHHDQICFLVVHETQLAIYEATKLECLKQWFARDLTAPISHATFSCDSQLIYTSFLDATVCVFSASNLRLRCRINPSAYLSASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAATSVGASSDEAQR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0092 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 919 960 IPR001680 GO:0005515
Ssu8g0092 1131 Coils Coil 1126 1131 - -
Ssu8g0092 1131 Pfam WD domain, G-beta repeat 918 951 IPR001680 GO:0005515
Ssu8g0092 1131 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Ssu8g0092 1131 SMART Lish 4 36 IPR006594 GO:0005515
Ssu8g0092 1131 MobiDBLite consensus disorder prediction 283 315 - -
Ssu8g0092 1131 SMART WD40_4 406 445 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 869 909 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 585 625 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 451 492 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 1002 1043 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 495 536 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 345 384 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 539 582 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 912 951 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 1056 1095 IPR001680 GO:0005515
Ssu8g0092 1131 SMART WD40_4 829 866 IPR001680 GO:0005515
Ssu8g0092 1131 SUPERFAMILY TolB, C-terminal domain 347 572 - -
Ssu8g0092 1131 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Ssu8g0092 1131 MobiDBLite consensus disorder prediction 1099 1131 - -
Ssu8g0092 1131 Gene3D - 738 965 IPR015943 GO:0005515
Ssu8g0092 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Ssu8g0092 1131 SMART ctlh 34 92 IPR006595 -
Ssu8g0092 1131 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 919 951 - -
Ssu8g0092 1131 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Ssu8g0092 1131 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1131 IPR027728 GO:0006355
Ssu8g0092 1131 Gene3D - 326 516 IPR015943 GO:0005515
Ssu8g0092 1131 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 502 1048 IPR011047 -
Ssu8g0092 1131 Gene3D - 966 1105 IPR015943 GO:0005515
Ssu8g0092 1131 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 980 1112 IPR011044 -
Ssu8g0092 1131 MobiDBLite consensus disorder prediction 1109 1131 - -
Ssu8g0092 1131 Gene3D - 517 735 IPR015943 GO:0005515
Ssu8g0092 1131 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Ssu8g0092 1131 PANTHER TOPLESS-LIKE PROTEIN 1 1131 - -
Ssu8g0092 1131 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0092 Ssu-Chr8 1532579 1541642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0092 456 669 Miscellaneous Gene Families AT5G08390 23.744 8.00e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0092 - - gmx:100790282 2171.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3461 4 85321700 85328789 Ssu8g0092 8 1532579 1541642 ECH
Ssu8g0092 8 1532579 1541642 Ssu8g0092 8 1532579 1541642 ECH