Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3461 ATGTCGTCTCTTAGTAGAGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAGACAGTGCACAAgCTTGAGCAGGAGTCGGGGTTTTTCTTTAAcatgaaatattttgaagatgaAGTGCACAATGGCAATTGGGATGAGGTGGAGAAATACCTCTCTGGTTTCACTAAGGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAACGAAGAATTGTTCAAGGAAATCACACAGCTTCTGACATTGGAAAATTTTAGGGAAAATGAACAATTGTCTAAGTATGGTGATACAAAGTCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTGATCAATCAAAGcTTAAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCTGATATAAAAACTCTCTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGTGCTCCTTCACCTGCTAATAACCCGCTACTAGGGTCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAGCCTACTCCAGCCCCAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACTACTGTAGCACATGCCGCTGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCGATCCCTGCTGCTTTAAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGATTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATTTCAGATGAGGTGAATCTACCTGTCAATGTGCTGTCAGCAACATTCCCAGGTCATGGTCAACATAGTCAAGCTTTTAACGCACCTGATGACATACCTAAGACTGTTGTGCGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCGTTACTTCTAGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAATTTCAAAGTTTGGGATCTTAGTGCTTGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCGGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCATACTCAAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGATGATATACGACAGCACCTGGagATTGATGCTCATGTTGGTGGAGTAAATGACCTAGCATTTTCCCACCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAGACCATTAAGgTATGGGATGCTGCTTCTGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCTCATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCAATAGatggaaaaataaaagcatGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAATCCTCTATTGTTGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACCTATCAAGGATTTCGTAAGCGGTCTTTGGGTGTGGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCTGGTGATGATTACTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGTATTCGTTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGATaatggaattaaaattttagccaatGGGGATGGTATTCGATTGTTGCGTACACTAGAGAATTCTTTATATGATGCATCGAGAGCATCAGAAACCTTGGCAAAGCCTACAATTAATCCGATTTCTGCTGCTGCCGCCGCAGCTGCAACCAGTGCTGCACTGGTAGAGAGGGCTTCGTCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTGCCGGAGAATTTAAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTACTCTGGAAATGGCAGCGAAACGAGCGTAACACATCTGGCAAGGCCACTGCTACCTTGCAACCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACGAATGACATTGCTGACAGCAATCCCGAGGATGCTGTACCCTGCTTTGCATTGTCCAAAAATGACTCGTACGTAATGTCTGCATCTGGAGGGAAGATATCTCTGTTCAATAtgatgacttttaagACTATGACAACTTTCATGCCTCCGCCCCCTGCGGCAACCTTTCTTGCTTTTCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCAtctattcaaatatataatgtcCGGGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGCGTTTGGAATACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGGAGGACACCACCAGTACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCTTGGTTGTACATGAAACTCAGCTCGCTATTTATGAAGCCACAAAACTAGAAGGTCTAAAGCAGTGGTTCCCGCGAGATTCATCCGCACCAATATCGCATGCAACTTTCTCATGTGATAGCCAGCTGATATATGCCAGCTTTATGGACGCAGCAGTCTGCGTATTTAGTGCTTCAAACCTCAGATTACGTTGTCGTGTCAATCCTTCTGCTTATCTTCCTGCAAGTGTCAGTTCCAACATACAACCACTTGTAATTGCGGCACATCCCCAAGAACCAAATCAGTTTGCTGTAGGACTTTCGGATGGGGGAGTTCAAGTTTTTGAACCCCTCGAGTCTGAAGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGGTCAGCAAGCAATGTGGCAGCTACTTCAGTTGGACCTTCTTCAGATCAAGCTCAACGATGA 3408 0.4246 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKTVVRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDYSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANDNGIKILANGDGIRLLRTLENSLYDASRASETLAKPTINPISAAAAAAATSAALVERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNTSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPVQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISHATFSCDSQLIYASFMDAAVCVFSASNLRLRCRVNPSAYLPASVSSNIQPLVIAAHPQEPNQFAVGLSDGGVQVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3461 1135 MobiDBLite consensus disorder prediction 1117 1135 - -
Ssu4g3461 1135 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 954 - -
Ssu4g3461 1135 Gene3D - 807 1099 IPR015943 GO:0005515
Ssu4g3461 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 963 IPR001680 GO:0005515
Ssu4g3461 1135 Gene3D - 322 549 IPR015943 GO:0005515
Ssu4g3461 1135 SMART Lish 4 36 IPR006594 GO:0005515
Ssu4g3461 1135 Gene3D - 550 685 IPR015943 GO:0005515
Ssu4g3461 1135 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1135 - -
Ssu4g3461 1135 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 473 959 IPR011047 -
Ssu4g3461 1135 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Ssu4g3461 1135 MobiDBLite consensus disorder prediction 1103 1135 - -
Ssu4g3461 1135 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Ssu4g3461 1135 Pfam WD domain, G-beta repeat 921 954 IPR001680 GO:0005515
Ssu4g3461 1135 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1135 IPR027728 GO:0006355
Ssu4g3461 1135 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Ssu4g3461 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Ssu4g3461 1135 SUPERFAMILY Nucleoporin domain 975 1110 - -
Ssu4g3461 1135 SMART WD40_4 406 445 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 345 384 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 585 625 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 915 954 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 628 669 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 872 912 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 495 536 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 451 492 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 1007 1047 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 832 869 IPR001680 GO:0005515
Ssu4g3461 1135 SMART WD40_4 539 582 IPR001680 GO:0005515
Ssu4g3461 1135 MobiDBLite consensus disorder prediction 285 304 - -
Ssu4g3461 1135 SUPERFAMILY WD40 repeat-like 347 535 IPR036322 GO:0005515
Ssu4g3461 1135 SMART ctlh 34 92 IPR006595 -
Ssu4g3461 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Ssu4g3461 1135 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3461 Ssu-Chr4 85321700 85328789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3461 456 653 Miscellaneous Gene Families AT5G08390 23.645 8.17e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3461 - - gmx:100795759 2200.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3461 4 85321700 85328789 Ssu8g0092 8 1532579 1541642 ECH
Ssu4g3461 4 85321700 85328789 Ssu4g3461 4 85321700 85328789 ECH