LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g3226	ATGGAAGAGGGCAGGGTCGTGAGTGAGGATTACACACAAGATGGAACTGTGGATCTTAAAGGGAAACCCATTCTCAAATCCAAAAGCGGTGGTTGGAAAGCTTGCTCCTTCGTTGTTgTGTACGAGATATTTGAGAGAATGGCTTATTATGGAATATCATCAAATTTGATATTGTATCTGACAAGGAAGCTTCACCAAGGCACTGTCACCTCTTCCAACAATGTGACCAACTGGGTTGGCACCATTTGGATAACTCCTATCTTAGGTGCCTACGTTGCCGATGCTCACCTTGGCCGCTATTGGACTTTCGTTATCGCCTCAGTCATCTATTTATTGGGTATGTCTCTTCTTACACTATCAGTTTCCCTTCCAAGCCTAAAGCCACCAGAGTGCCACGAAATGGATGTGACAAAATGCGAAAAGGCCTCCACACTACATCTTGCTGTGTTCTATGGTGCACTCTACACCCTAGCACTGGGAACTGGTGGAACCAAGCCCAACATTTCCACCATTGGTGCTGACCAATTTGATGACTTTGACTCCAAAGAGAAGAGGCACAAACTCTCCTTCTTCAATTGGTGGATGTTCAGCATCTTCATTGGGACCCTCTTTGCAAATTCTGTGCTAGTCTATATACAAGATAATGTGGGGTGGACTCTTGGGTATGCTCTTCCCACTCTTGGACTTGCAATATCAATCATCATATTTTTGGTAGGCACACCCTTTTATAGACACAAATTACCCACTGGGAGTCCCTTCACTAAAATGGCCAAGGTCATTGTGGCTGCTATAAGGAAATGGAAAGTGCCTATTCCTACTGACACTAAAGAACTATACGAGCTTGATTTGGAAGAGTACGCAAAAAAAGGGAGAGTCAGAATTGATTCCACTCCAACCTTGAGGTTCCTCAACAAGGCATGTGTCAAGATTGGTTCAGGTACTAGTGCATGGATGCTAAGCCCTGTTACTCATGTAGAGGAGACCAAACAAATGCTAAGAATGATCCCCATCTTGGTTGCTACATTTATTCCTAGTGCAATGGTTGCACAGATAGCTACCCTTTTTGTGAAACAAGGAATTACACTTGACAGAGGCATTGGCAGCTTCGATATCCCCCCAGCAAGTTTAGGCACATTTGTAACTCTGTCCATGCTTATCTGTGTGGTGCTCTATGACCGTTTCTTTGTCAAGATTATGCAAAGATTGACCAAGAACCCTCGAGGAATAACCCTTCTCCAAAGGATTGGAATTGGCCTCATAATCCACATTGTGATTATGGTAGTTGCATCTCTAACTGAAAGGTATAGACTTAGAGTGGCCAAAGAACATGGGTTAGTAGAAACTGGAGGACAAGTTCCCCTAAGCATATTCATCTTGCTTCCTCAATATATTCTTATGGGGACCGCTGATGCATTTGTAGAGGTTGCCAAAATTGAGTTCTTTTATGACCAAGCCCCAGAAAGCATGAAGAGCCTTGGCACTTCCTATTCAATGACTACCTTGGGCATTGGGAATTTCCTAAGCACTTTTCTTCTCACAACAGTTTCACATGTCACCAAGGAACATGGTCACCAAGGATGGGTTTTGAACAACTTGAATGCTTCTCATCTTGATTACTATTATGCACTTTTGGCCATACTAAACTTGGTGAACTTCATATTCTTCATGGTCGTGACAAAGTTCTATGTGTATAGAGCTGAAATTTCAGATTCCATAAAAGTGCTTGCAGAAGAGCTGAAGGAAAAGACAACTGTTTTAATGACTTTTTATGGGATATCATCAAACTTGGTCCTGTATCTGACAAAGAAGCTTCACCAAGACACTGTCACTGCTTCCGACAATGTCAACAATTGGGTTGGCACTATTTATATAACTCCTATATTGGTTTCCCTTCCAAGCCTAAAGCCACCTGAGTGCCATGAATTGGATGTGACAAAATGCAAGAAGGCCACCGCACTACAGTTAGCTGTGTTCTATGGTGCACTATACATCTTAACAGTGGGAAGTGGTGGAACCAAGCCCAACATTTCCACCATTGGTGCTGATCAATTTGATGATTTTGACCCCAAAGAGAAGGCACAtaagctgtcattcttcaactgGTGGTTTTCCAGCATCTTCATTGGGACCCTTTTTTCATTCACAGTTCTAGTGTATATACAAGACAATGTGGGGTGGGCTCTTGGTTATGGTATTCCAACTATTGGGCTTGCAATAGCACTCATCACATTCCTGGCAGGCACACCCGTCTATAGACACAGATTGGCCTCAGGGAGTTCCTTCACTAGAATTGCCAAGGTTATAGTGGCTGCTTTGAGGAAAATGAATGTAACTGTTCCTATTGACTCTGAAGAACTACATGAGCTTGATGTTGAAGAGTATACAAATAAAGGGAAATTCAGGATTAATTCCACTCCAACATTGAGGTTCCTCAACAAGGCCTGTGTCAAAACTAGTTCAAGTAATAGTGAATGGATGCTGTGCACAGTTACCCAAGTAGAGGAAACTAAACAAATCCTAAGAATGATCCCCATCTGGGTTGCTACATTTATTCCTAGTGCAATGCTTGCTCAAACAAATACCCTTTTTGTAAAGCAAGGAGTTACTCTTGATAGACACATTGGGAGATTCAATATTCCCCCTGCAAGTTTGATTGCATTTACATCTTTCACCATGCTTGTCTGTGTTGTACTCTATGACCGTGTCTTTGTCAAGATTATGCGGAGATTTTCTAAGAACCCCCGAGGGATTACACTGCTTCAAAGAATGGGCATAGGAATCATGATTCACATAGTGACTATGATAGTTGCATCTTTGACCGAAAGATATAGACTTAAAGTGGCCAAAGAACATGGGGTAGTTGAAAATGGAGGACAAGTTCCTTTGAGCATACTCATTTTGGCACCTCAATTCGTACTTATGGGATTGGGTGAAGCCTTCTTAGAGGTTTCCAAAATTGAGTTCTTCTATGACCAAGCCCCAGAAAGCACGAAGAGCCTTGGCACTTCATATTCCATTACTACTGTAGGCATTGGGAGTTTCGTCAGCACTTTTCTTCTCTCCACAGTTTCACACATCACTCAGAAACATGGCCACAAAGGATGGATTTTGAACAACTTGAATGCTTCTCATCTTGATTACTACTATGCTTTTTTTGCAGTACTAAACTTTGtgaatttcatcctcttcttgATTGCTACAAAGTACTTCGTGTATAGGGCTGAAATTTCAGATGCCATAGATGTACTTGCACATGAACTGAAGGAGAGGACAGCCAGTGTGTCAAACCAAGCGGTTCCTAGTGATTAG	3309	0.417	MEEGRVVSEDYTQDGTVDLKGKPILKSKSGGWKACSFVVVYEIFERMAYYGISSNLILYLTRKLHQGTVTSSNNVTNWVGTIWITPILGAYVADAHLGRYWTFVIASVIYLLGMSLLTLSVSLPSLKPPECHEMDVTKCEKASTLHLAVFYGALYTLALGTGGTKPNISTIGADQFDDFDSKEKRHKLSFFNWWMFSIFIGTLFANSVLVYIQDNVGWTLGYALPTLGLAISIIIFLVGTPFYRHKLPTGSPFTKMAKVIVAAIRKWKVPIPTDTKELYELDLEEYAKKGRVRIDSTPTLRFLNKACVKIGSGTSAWMLSPVTHVEETKQMLRMIPILVATFIPSAMVAQIATLFVKQGITLDRGIGSFDIPPASLGTFVTLSMLICVVLYDRFFVKIMQRLTKNPRGITLLQRIGIGLIIHIVIMVVASLTERYRLRVAKEHGLVETGGQVPLSIFILLPQYILMGTADAFVEVAKIEFFYDQAPESMKSLGTSYSMTTLGIGNFLSTFLLTTVSHVTKEHGHQGWVLNNLNASHLDYYYALLAILNLVNFIFFMVVTKFYVYRAEISDSIKVLAEELKEKTTVLMTFYGISSNLVLYLTKKLHQDTVTASDNVNNWVGTIYITPILVSLPSLKPPECHELDVTKCKKATALQLAVFYGALYILTVGSGGTKPNISTIGADQFDDFDPKEKAHKLSFFNWWFSSIFIGTLFSFTVLVYIQDNVGWALGYGIPTIGLAIALITFLAGTPVYRHRLASGSSFTRIAKVIVAALRKMNVTVPIDSEELHELDVEEYTNKGKFRINSTPTLRFLNKACVKTSSSNSEWMLCTVTQVEETKQILRMIPIWVATFIPSAMLAQTNTLFVKQGVTLDRHIGRFNIPPASLIAFTSFTMLVCVVLYDRVFVKIMRRFSKNPRGITLLQRMGIGIMIHIVTMIVASLTERYRLKVAKEHGVVENGGQVPLSILILAPQFVLMGLGEAFLEVSKIEFFYDQAPESTKSLGTSYSITTVGIGSFVSTFLLSTVSHITQKHGHKGWILNNLNASHLDYYYAFFAVLNFVNFILFLIATKYFVYRAEISDAIDVLAHELKERTASVSNQAVPSD	1102

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g3226	1102	CDD	MFS_NPF5	32	564	IPR044739	GO:0042937\|GO:0042938\|GO:0071916
	Ssu7g3226	1102	Pfam	POT family	100	528	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Ssu7g3226	1102	Pfam	POT family	630	1036	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Ssu7g3226	1102	SUPERFAMILY	MFS general substrate transporter	24	560	IPR036259	-
	Ssu7g3226	1102	Gene3D	MFS general substrate transporter like domains	583	1078	IPR036259	-
	Ssu7g3226	1102	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	629	1082	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Ssu7g3226	1102	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	587	628	IPR000109	GO:0016020\|GO:0022857\|GO:0055085
	Ssu7g3226	1102	Gene3D	MFS general substrate transporter like domains	5	570	IPR036259	-
	Ssu7g3226	1102	PANTHER	PEPTIDE TRANSPORTER	15	573	-	-
	Ssu7g3226	1102	SUPERFAMILY	MFS general substrate transporter	652	1067	IPR036259	-
	Ssu7g3226	1102	PANTHER	PEPTIDE TRANSPORTER	629	1082	-	-
	Ssu7g3226	1102	PANTHER	PEPTIDE TRANSPORTER	587	628	-	-
	Ssu7g3226	1102	PANTHER	OLIGOPEPTIDE TRANSPORTER-RELATED	15	573	IPR000109	GO:0016020\|GO:0022857\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g3226	Ssu-Chr7	76841616	76874303	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g3226	7	578	Organic Solute Cotransporters	AT5G46040	67.247	0.0	779

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu7g3226	-		-	gmx:100813385	1056.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu7g3226	7	76841616	76874303	Ssu7g3226	7	76841616	76874303	ECH
	Ssu4g1197	4	19061367	19063557	Ssu7g3226	7	76841616	76874303	PCT