Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1197 ATGGCAGTGATAGAAGGAAAAAGCCCTGCAAGCGGGAACGAAGATTACACTCAAGATGGCACAGTGGACCTAAAAGGTAGACCCGTTTTGAGATCAAAGACGGGAAGATGGAAAGCTTGTTCCTTCATAGTAGGGTACGAAGTGTTTGAGAGGATGGCTTTCTACGGGATAGCATCAAACCTAGTGATATATCTAACAAATAAGCTCCATGAGGGCACTGTGAAATCTTCAAACAACGTTAGCAATTGGGTGGGAGCAGTGTGGATGATGCCACTGGCAGGAGCTTACATAGCGGATGCCTATCTTGGACGATATAGGACCTTTGTAATTGCATCATGTATCTATGTTCTGGGAATGTGTCTGTTGACTCTAGCAGTTTCACTACCAGCACTGAGGCCACCACCATGTACTCAAGACCAGAATTGCCCACAGGCGTCGTCATTGCAATATGGTACTTTCTTCTTGGCCCTTTATATCATTGCAATAGGCACAGGGGGAACCAAGCCCAACATTTCTACCATGGGGGCAGACCAATTTGACGAGTTTGAGCCCAAAGAGAGATCCCACAAGCTTTCCTTCTTCAATTGGTGgttttttagtattttctttGGTACCCTTTTCTCCAACACTTTCTTGGTTTACATACAAGACAATGTGGGTTGGACCATAGGATATGGCCTTCCCACCCTTGGCCTTGCTGTTTCAGTATTGGTGTTTCTGGTAGGAACTCCATTTTATAGGCACAAATTGCCCTCAGGTAGCCCAATAACAAGGATGCTTCAGGTCTTTGTGGCAGCTGGGAGGAAGTGGAAGCTACATGTCCCAGATGATCCAAAAGAGCTACATGAGCTAAGCATTGAAGAGTATGCAAGTAACGGGAGAAACAGAATTCATCATAGCTCTTCATTGAGTTTCCTTGACAAAGCAGCTATGAAGACTGGCCAAACATCATCATGGACGCTTTGTACAGTGACCCAAGTGGAGGAAACCAAACAAATGACAAAACTGATTCCTATTTTGCTTACAACGATTGTTCCAAGCACCATGATAGTTCAAGCGGGCACAATCTTTGTCAAACAAGGCACCACGCTAGACAGGAGAATGGGACCCCATTTTGAAATCCCCCCGGCATGTCTTGCGGCATTTATAACTATCTTCATGCTGATAAGCATTGTTGTCTATGACCGTGTTTTTGTTCCTGCAATCCGGCGCTACACAAAGAACCCAAGGGGAATCACAATGCTGCAGAGACTTGGCATTGGACTTGCGCTACATGTCATCATAATGATCACTGCATGCTTAGCTGAAAGAAGGAGACTCAGGGTTGCAAGAGAAAACCACCTCTTTGGCCTGCACGATACAATTCCCCTTACTATTTTCATCCTCCTCCCTCAGTATGCTTTGGCAGGGGTTGCTGATAACTTCGTCGAAGTTGCCAAGATAGAGTTATTCTATGATCAAGCACCAGATGGCATGAAAAGTCTCGGAACAGCATATTTCACAACCAGCTTGGGTATTGGAAGTTTTCTCAGCAGTTTTCTTCTCTCAACTGTTGCTGATATCACCAAGAGACATGGTCACAAGGGTTGGGTTTTGGATAATCTAAACGTCTCCCGTttagattattattatgcattcaTGGCCATACTAAGCTTTCTCAACTTCCTCTGCTTTTTGGTTGTTGCCAAGTTCTTTGTCTATAATGTTGATGTAACACAAACCAAATTGGGCTTGGACATTAGCCGTGCTTCGTCACAGCCACAGGACAATACTGGAATAGCAAAGCACCCCGCAACCAGATGGCAAATTCTAGGGAGAACACCCCCTCTTCTGCTATTAGCCTTTTAG 1848 0.4426 MAVIEGKSPASGNEDYTQDGTVDLKGRPVLRSKTGRWKACSFIVGYEVFERMAFYGIASNLVIYLTNKLHEGTVKSSNNVSNWVGAVWMMPLAGAYIADAYLGRYRTFVIASCIYVLGMCLLTLAVSLPALRPPPCTQDQNCPQASSLQYGTFFLALYIIAIGTGGTKPNISTMGADQFDEFEPKERSHKLSFFNWWFFSIFFGTLFSNTFLVYIQDNVGWTIGYGLPTLGLAVSVLVFLVGTPFYRHKLPSGSPITRMLQVFVAAGRKWKLHVPDDPKELHELSIEEYASNGRNRIHHSSSLSFLDKAAMKTGQTSSWTLCTVTQVEETKQMTKLIPILLTTIVPSTMIVQAGTIFVKQGTTLDRRMGPHFEIPPACLAAFITIFMLISIVVYDRVFVPAIRRYTKNPRGITMLQRLGIGLALHVIIMITACLAERRRLRVARENHLFGLHDTIPLTIFILLPQYALAGVADNFVEVAKIELFYDQAPDGMKSLGTAYFTTSLGIGSFLSSFLLSTVADITKRHGHKGWVLDNLNVSRLDYYYAFMAILSFLNFLCFLVVAKFFVYNVDVTQTKLGLDISRASSQPQDNTGIAKHPATRWQILGRTPPLLLLAF 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1197 615 PANTHER PROTEIN NRT1/ PTR FAMILY 5.2-LIKE 19 578 - -
Ssu4g1197 615 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 578 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1197 615 Pfam POT family 105 531 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g1197 615 SUPERFAMILY MFS general substrate transporter 27 562 IPR036259 -
Ssu4g1197 615 CDD MFS_NPF5 37 567 IPR044739 GO:0042937|GO:0042938|GO:0071916
Ssu4g1197 615 Gene3D MFS general substrate transporter like domains 9 573 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1197 Ssu-Chr4 19061367 19063557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1197 14 574 Organic Solute Cotransporters AT5G46040 62.367 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1197 - - gmx:100807002 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1197 4 19061367 19063557 Ssu4g1197 4 19061367 19063557 ECH
Ssu4g1197 4 19061367 19063557 Ssu7g3226 7 76841616 76874303 PCT