Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2823 ATGATTAACGTCAATGATTATGGAGCTCGAGGAGATGGTAAAAGTGATGACACACAGGTATTCAAGAAGGCTTGGCAGGTAGCATGTTCTTCTGGGGGAGCAGTTCTTGTGGTGCCTCAGAAGAATTATCTACTCAAGCCAATCACATTTTCTGGCCCATGCAAATCCAACATCGCAGTACAGATATCTGGAACCCTTGAAGCATCAGATAACCCATCAGATTACAGCGAAGACAGCACACACTGGCTTAGGTTTGCAACTGTTCAGAAACTATCAGTTAAAGGTGGTGGAACCATCGATGGAAATGGAAACATATGGTGGCAAAACTCAtgcaaaaggaacaaaaatctTGCGTTGACTTTCTACAAGTGCAACAACTTGATAGTTGAGGATTTGACGATAAAAAATGGCCAACAAATCCATGTTTCATTCCAAGACTCCGAGAATGTTAAAGTTTCTGGTCTCACTGTGAGAGCGCCTGGGAATAGCCCAAACACCGACGGAATTCATGTCACGAACACTCAAAACATTCAAATCTCAAGCTCCGTCATAGGAACTGGTGATGATTGTATATCAATTGTAAGTGGATCCAGGAATCTACTAGCCACAGACATAACCTGCGGACCAGGCCATGGTATTAGCATCGGAAGCTTAGGGGCCGGGGGATCCCAGGATTTCGTTTCAGGAATAATGGTGAACGGAGCAAAGTTTTCTGGAACTACAAATGGAGTAAGAATTAAGACATGGCAgGGAGGGTCAGGCGGTGCAAGCAACATCCAGTTTCAGAACATTCAGATGGACAATGTGACCAACCCCATAATAATAGATCAAAACTACTGTGATCAAACGACACCATGCAAAAAACAACAATCTGCAGTTCAGATTAGGAATGTGTTGTACCAAAACATAAAGGGCACAAGTGCTTCTGATGTGGGTGTGCAATTTGATTGCAGCCAGAACTTTCCATGCCAGGGGatagtgttgcagaacatagaCCTGCGGCGTGAAGGTAGAGGAGGGGCCAAAGCTTCATGCAACAGTGTTAAATTGTCCTACAGAGGAGACGTTAGCCCTCACTGCCCATAG 1086 0.4309 MINVNDYGARGDGKSDDTQVFKKAWQVACSSGGAVLVVPQKNYLLKPITFSGPCKSNIAVQISGTLEASDNPSDYSEDSTHWLRFATVQKLSVKGGGTIDGNGNIWWQNSCKRNKNLALTFYKCNNLIVEDLTIKNGQQIHVSFQDSENVKVSGLTVRAPGNSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVSGSRNLLATDITCGPGHGISIGSLGAGGSQDFVSGIMVNGAKFSGTTNGVRIKTWQGGSGGASNIQFQNIQMDNVTNPIIIDQNYCDQTTPCKKQQSAVQIRNVLYQNIKGTSASDVGVQFDCSQNFPCQGIVLQNIDLRREGRGGAKASCNSVKLSYRGDVSPHCP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2823 361 SMART pbh1 147 173 IPR006626 -
Ssu7g2823 361 SMART pbh1 256 277 IPR006626 -
Ssu7g2823 361 SMART pbh1 124 144 IPR006626 -
Ssu7g2823 361 SMART pbh1 174 195 IPR006626 -
Ssu7g2823 361 SMART pbh1 227 248 IPR006626 -
Ssu7g2823 361 SUPERFAMILY Pectin lyase-like 2 360 IPR011050 -
Ssu7g2823 361 Gene3D - 1 357 IPR012334 -
Ssu7g2823 361 PANTHER ENDO POLYGALACTURONASE 2 360 - -
Ssu7g2823 361 Pfam Glycosyl hydrolases family 28 35 349 IPR000743 GO:0004650|GO:0005975
Ssu7g2823 361 ProSitePatterns Polygalacturonase active site. 204 217 IPR000743 GO:0004650|GO:0005975
Ssu7g2823 361 PANTHER - 2 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2823 Ssu-Chr7 58984808 58988906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2823 2 360 Glycoside Hydrolase AT3G07970 56.757 5.39e-145 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2823 K01184 - gmx:100816917 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2823 7 58984808 58988906 Ssu7g2823 7 58984808 58988906 ECH
Ssu7g2823 7 58984808 58988906 Ssu4g1478 4 24706780 24709564 PCT