Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1478 ATGGCCCTCCTCAAACACCTCCTCTCATTCACCAttatcatcatttcttttgttgCTTGTTATAGCACCTCGCTAGAGGACCCACCTAGTAGTATATATGTTGATAATTCACCTTCCATTGATGATGGTGGGACATTCAAGAACATGATCAAGCAAAGCACAGATGTTTTCGCCTTAAACAGGTTTGACAAGTTGGGTAATCATCATCGTTCGCATAAAATGGTTAATGTCAATGACTACGGAGCTAAAGGGAATGGTTGCACTGATGACACAGAGGCTTTCGAGAAGGCTTGGGAAGTAGTATGTTCTTCTGGGGAAGCAATTCTTGCGGTGCCTCAGGAGAATTACCTGCTCAAACCAATCAGATTCTCTGGCCCTTGCAAACCTAACGTTGAAGTCCAGATTTCTGGAACCCTTAAAGCATCAGATGATCCATCAGATTATAGCGAAGACAGCAGATACTGGCTTGTATTTGACAGTATTCAGAAACTATTTGTTTATGGTGGGGGAACCATCAATGGAAACGGCAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGCGCCCATGCAAGGATGCCCCAACGgcTCTGACTTTCTATAATTGCGATGACTTGATAGTTGAGAACTTGAGCATAGAAAATGCTCAACAAATCCACGTTTCATTCCAGGACTCCGTGAATGTTAAGGTTTCTGGCCTTAACGTGATCTCACCCGAGGATAGCCCCAACACCGATGGGATTCATGTCACCAATACGCAAAACATCCAAATCTCAAGCTCTGTTATAGGAACTGGTGATGATTGTATATCTATTGTTCATGGATCTAGAAATGTAGAAGCCACAGACATTGCCTGTGGACCCGGCCATGGTATCAGTATTGGAAGCTTAGGGGCCGGAAAATCCGAGGAATTTGTTTCAGGAATACTAGTGAATAGAGCCAAGATTTTTGGAACTAAAAATGGAGTTAGAATCAAGACATGGCagGGAGGTTCAGGAAGTGCTAGCAACATCCAGTTTCAGAACATTGAAATGGACAATGTGACCAACCCCATAATAATAAATCAGAATTACTGTGACAAGAAAAAGAAGCCATGCAAAAAAGGGAAATCCGCGGTCCAAATCAAGAATGTGTTGTACCAGAACATAACGGGTACAAGTGCTTCTGATATAGCCGTGAAGTTTGATTGCAGCGAGAACTATCCTTGCCAGGAGATAGTATTGCAGAACATAGACCTCCAATGTGAAGGAGGAGATGATGCCGAGGCTTTATGTAACAATGTTGAATTGTCTTACTTAGGACACGTCAGACCTCGTTGCAACTCGGAAAGAGATAGAAAGACATCTACTATTACCTCCATATGGAAAGAATTCTCATGGTTTATATGA 1392 0.4174 MALLKHLLSFTIIIISFVACYSTSLEDPPSSIYVDNSPSIDDGGTFKNMIKQSTDVFALNRFDKLGNHHRSHKMVNVNDYGAKGNGCTDDTEAFEKAWEVVCSSGEAILAVPQENYLLKPIRFSGPCKPNVEVQISGTLKASDDPSDYSEDSRYWLVFDSIQKLFVYGGGTINGNGNIWWQNSCKRNKKRPCKDAPTALTFYNCDDLIVENLSIENAQQIHVSFQDSVNVKVSGLNVISPEDSPNTDGIHVTNTQNIQISSSVIGTGDDCISIVHGSRNVEATDIACGPGHGISIGSLGAGKSEEFVSGILVNRAKIFGTKNGVRIKTWQGGSGSASNIQFQNIEMDNVTNPIIINQNYCDKKKKPCKKGKSAVQIKNVLYQNITGTSASDIAVKFDCSENYPCQEIVLQNIDLQCEGGDDAEALCNNVELSYLGHVRPRCNSERDRKTSTITSIWKEFSWFI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1478 463 ProSitePatterns Polygalacturonase active site. 284 297 IPR000743 GO:0004650|GO:0005975
Ssu4g1478 463 SMART pbh1 254 275 IPR006626 -
Ssu4g1478 463 SMART pbh1 307 328 IPR006626 -
Ssu4g1478 463 SMART pbh1 336 357 IPR006626 -
Ssu4g1478 463 SMART pbh1 227 253 IPR006626 -
Ssu4g1478 463 SMART pbh1 204 224 IPR006626 -
Ssu4g1478 463 Pfam Glycosyl hydrolases family 28 108 430 IPR000743 GO:0004650|GO:0005975
Ssu4g1478 463 SUPERFAMILY Pectin lyase-like 72 445 IPR011050 -
Ssu4g1478 463 Gene3D - 65 460 IPR012334 -
Ssu4g1478 463 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Ssu4g1478 463 PANTHER - 6 447 - -
Ssu4g1478 463 PANTHER ENDO POLYGALACTURONASE 6 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1478 Ssu-Chr4 24706780 24709564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1478 49 443 Glycoside Hydrolase AT2G41850 57.393 3.77e-148 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1478 K01184 - gmx:100797601 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1478 4 24706780 24709564 Ssu4g1478 4 24706780 24709564 ECH
Ssu7g2823 7 58984808 58988906 Ssu4g1478 4 24706780 24709564 PCT