Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2822 ATGGGTGTCTTAGAGGATCTCCGGTTCTTGTGTTGTTTCCGGTTCAAGTTGTGGTGGATGACTCACAGAGTGGGAACTTGTGGGAGGGATGTCCCATTGGAGACTCAATTCATGCTTATAGAGAGCAAAGACAATAAAGATCACCAGGAGAATTCTCCAACAGTCTACACTGTCCTGCTTCCTCTCCTGGAAGGCCAGTTCCGCTCTGTTCTACAAGGCGAGGACAAAAATGAGATAAAGATTTGCCTTGAGAGTGGTGATTCCCCAAGTTTGAAGAGATGTTGGGGTGGAGCTATCAGATGTGAATTTACTAATTGGATGGAGAAATATCCTCAATGGGATGCTTTCTATACTGATGTTACAGCAGAGGGTGTTGAGGAAGGCCTGAAAAGCTTATCAGAGGGAGGTACATCTCCACGGTTCCTCATCATAGATGATGGTTGGCAACAGATTGAAAGTAAACCAAAGGATGCTGATTGTGTTGTACAAGAAGGAGCACAGTTTGCTACTAGGTTGACTGGAATTAAAGaaaatactgaatttcaaaagAGCAACAACACAATCTCGGGTCTGAAGCATGTTGTAGATGAAGCAAAGCAACGTCGCAATGTGAAATATGTTTATGTTTGGCATGCTCTAGCTGGTTATTGGGGTGGAGTGAAGCCTGCAGCTAGTGGCATGGAACATTATGACACTGCCTTGGCATATCCAGTACAGTCTCCAGGCATCCTAGGAAACCAACCAGACATTGTCATGGACAGCTTGTCTGTACACGGCTTGGGCCTGGTGCACCCAAAGAAGGTTTTTGATTTCTACAATGAGCTCCATGCTTACTTGGCTTCATGTGGAGTAGATGGAGTGAAGGTTGATGTGCAAAACATTATTGAGACCCTAGGTAGTGGACATGGTGGCAGGGTCTCACTCACGCGCAGCTATCATCAGGCGCTTGAGGCCTCCGTTGCTCGTCATTTTCCTGACAATGGATGCATTGCCTGCATGTGTCATAACACTGATGGCCTTTATAGTGCCAAGCAGACTGCTGTTGTGAGAGCATCTGATGACTTTTACCCCCGTGATCCTGCTTCCCACACCATTCATGTTTCATCTGTCGCGTATAACACACTTTTCCTGGGAGAGTTCATGCAACCTGACTGGGATATGTTTCATAGTTTACATCCAGCCGCAGAGTATCATGCTGCAGCTCGGGCTGTCAGTGGAGGTCCAATTTATGTTAGTGATAAGCCAGGAAGGCacaattttgattttctcaAGAAACTGGTTCTGCCTGATGGTTCAGTTCTCCGTGCTCAGTTGCCTGGCCGGCCCACTGTTGACTCTCTCTTTGTTGATCCAGCAAGAGATGGGACTAGCTTGCTCAAGATATGGAACTTGAACAAATGCTGTGATGTGGTTGGTGTGTTTAACTGCCAAGGTGCTGGGTGGTGCAAGATTCAGAAGAAAACCCGAATTCATTGTGCATCCCCCGGGACACTCACTGGCTCTGTTTGTGCCTCTGATGTCGACCTCATTGCTCAAGTAGCAGGTGCTGATTGGCATGGCGACACTATTGTCTATGCCTATAGATCAGGTGAGGTAATTCGTCTACCAGAAGGTGCTTCGGTGCCCGTGACACTAAAAGTTCTAGAGTATGAACTTTTTCATTTCTGTCCAATCAAGGAAATTGCACCAAGTATTTCATTTGCACCAATTGGGCTATTGGATATGTTAAACACTGGTGGTGCTGTGGAACAGTTTGAAGTATATAAAGAATCTGAAGTGCCTGATGGAGATAACTCAGGAAGAGCAACTATTACCCTCAAGAGTCAGGGGAAGTGGCAGATTTGGGGTTTACTCCTCCCAGCGCCCACTGAAGTGTGTGGTAGTTGA 1887 0.4573 MGVLEDLRFLCCFRFKLWWMTHRVGTCGRDVPLETQFMLIESKDNKDHQENSPTVYTVLLPLLEGQFRSVLQGEDKNEIKICLESGDSPSLKRCWGGAIRCEFTNWMEKYPQWDAFYTDVTAEGVEEGLKSLSEGGTSPRFLIIDDGWQQIESKPKDADCVVQEGAQFATRLTGIKENTEFQKSNNTISGLKHVVDEAKQRRNVKYVYVWHALAGYWGGVKPAASGMEHYDTALAYPVQSPGILGNQPDIVMDSLSVHGLGLVHPKKVFDFYNELHAYLASCGVDGVKVDVQNIIETLGSGHGGRVSLTRSYHQALEASVARHFPDNGCIACMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHVSSVAYNTLFLGEFMQPDWDMFHSLHPAAEYHAAARAVSGGPIYVSDKPGRHNFDFLKKLVLPDGSVLRAQLPGRPTVDSLFVDPARDGTSLLKIWNLNKCCDVVGVFNCQGAGWCKIQKKTRIHCASPGTLTGSVCASDVDLIAQVAGADWHGDTIVYAYRSGEVIRLPEGASVPVTLKVLEYELFHFCPIKEIAPSISFAPIGLLDMLNTGGAVEQFEVYKESEVPDGDNSGRATITLKSQGKWQIWGLLLPAPTEVCGS 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2822 628 PANTHER - 1 88 IPR008811 -
Ssu7g2822 628 PANTHER - 103 611 IPR008811 -
Ssu7g2822 628 Gene3D Aldolase class I 108 426 IPR013785 -
Ssu7g2822 628 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 1 88 - -
Ssu7g2822 628 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 103 611 - -
Ssu7g2822 628 Pfam Raffinose synthase or seed imbibition protein Sip1 1 88 IPR008811 -
Ssu7g2822 628 Pfam Raffinose synthase or seed imbibition protein Sip1 112 593 IPR008811 -
Ssu7g2822 628 SUPERFAMILY (Trans)glycosidases 111 431 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2822 Ssu-Chr7 58967026 58971438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2822 1 455 Glycoside Hydrolase AT3G57520 73.984 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2822 K06617 - gmx:100807861 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2822 7 58967026 58971438 Ssu7g2822 7 58967026 58971438 ECH
Ssu4g1477 4 24694482 24698763 Ssu7g2822 7 58967026 58971438 PCT