Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1477 ATGACGGTCACACCTAAGATCTCCATTAACGATGGGAAACTTGTTGTCCATGGCAAGACCATACTGACTGGAGTGGCGGACAACGTTGTGCTGACTCCAGGATCTGGAAGGGGCCTTGTGACTGGTGCGTTCATTGGTGCCACGGCTTCCCACAGCAAAAGTCTCCATGTGTTTCCCATGGGTGTCCTAGAGGGGCTCCGGTTCATGTGTTGTTTCCGGTTCAAGTTATGGTGGATGACTCAGAGAATGGGAACTTGTGGGAGGGATGTTCCTCTGGAGACGCAATTCATGCTTATTGAGAGCAAAGAGAGTGAAGTGGATGGGGAGAATTCTCCAATCATCTACACTGTCTTGCTTCCTCTCCTGGAAGGTCAATTCCGAGCTGTTCTTCAAGGCAATGACAAAAACGAGATAGAGATTTGCCTCGAGAGTGGGGATAATGAGGTTGAGACTGACCAAGGCCTTCACATGGTCTACATGCATGCTGGGACCAACCCCTTTGAAGTCATCAATCAAGCGGTCAAGGCGGTGGAAAAACACAAGCAAACTTTTCTTCATCGTGAGAAGAAAAGATTGCCATCTTTTCTTGATTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACTGATGTCACAGCTGAGGGTGTTGAGAAAGGCCTGAAAAGTCTCTCAGAGGGAGGTACACCCCCACGGTTCCTCATCATAGATGATGGTTGGCAACAGATTGAAAGTAAACCAAAGGATGCTGATTGTGTTGTACAAGAAGGAGCACAGTTTGCTACTAAATTGACTGGTATTAAAGagaatactaaatttcaaaagaagTCACAGAACAATGAGCAGATATCAGGTCTGAAGCATCTTGTAGATGGAGCAAAGCAGAATCACAATGTGAAAAATGTTTATGTATGGCATGCACTAGCTGGTTACTGGGGTGGAGTGAAGCCAGCAGCAGCTGGCATGGAACATTATGACACTGCCTTGGCTTATCCAGTGCAGTCACCAGGTGTGCTAGGAAATCAACCAGACATTGTTATGGACAGCTTGGCTGTACATGGCCTGGGCCTAGTGCACCCAAAGAAGGTTTTCAATTTCTACGATGAGCTCCATGCTTACTTAGCTTCGTGTGGAGTAGATGGAGTGAAGGTTGATGTGCAGAACATTATTGAGACCCTTGGTGCTGGACATGGTGGCAGAGTCTCACTTACACGCAGCTATCATCATGCACTTGAGGCTTCCATTGCTCATAACTTTGCCGACAACGGATGCATTGCTTGTATGTGTCACAACACTGATGGGCTTTATAGTGCTAAGCAGACTGCTGTTGTGAGAGCGTCGGATGATTTTTACCCTCATGATCCCGCTTCCCACACCATCCATATTTCATCTGTTGCATACAACTCACTTTTCCTTGGAGAATTCATGCAACCTGACTGGGACATGTTTCATAGTTTACACCCAGCAGCAGAGTATCATGCTGCAGCTCGTGCTATTGGTGGATGTCCAATTTATGTTAGTGACAAGCCAGGCAACCACAATTTTGATCTTCTTAAGAAGCTGGTTCTCCCTGATGGTTCGGTTCTCCGTGCTCAGTTACCTGGCAGGCCCACTCGTGATTCTCTCTTTGCTGATCCAGCGAGAGATGGGACTAGCTTGCTCAAAATATGGAACCTGAACAAATGCTCTGGAGTTGTTGGTGTGTTTAACTGCCAAGGCGCTGGGTGGTGCAAGATAGAGAAGAAAACCCGCATCCATGATACATCTCCTGGTACACTCACTGGCTCTGTCTGTGCCTCTGATGTTGACCTCATCACCCAAGTAGCAGGTGCTGAATGGCTTGGAGAGACTATTGTTTATGCTTACAAATCAGGCGAGGTGATTCGGCTACCTAAAGGGGTTTCGGTTCCATTGACACTAAAAGTTCTGGAGTTTGAACTTTTCCATATCTGTCCAATCTATGAAATAGCACCAAGTATTTCATTTGCAGCAATAGGGCTACTGGATATGTTCAACACTGGAGGAGCTGTGGAGCAGGTTGAAATTCATAGAGCTTCTAACAACAAACCAGAACTGTTTGATGGAGAGGTGTTATCGGAACTGACCTCTTCTCTCAGTCCTAACCGAGCAGCAACAGCAACTATTGCTCTTAGAGTCAGGGGAAGGGGCAGATTTGGAGTTTATTCCTCCCAGCGCCCACTGAAGTGTGGGGTAGATGGAACTGAAACCGACTTCAACTATGACTCGGAGACTGGGTTGACAACCTTCTCCATCCCAGTTCCTCCAGAGGAGATGTACAGATGGTCAATAGAGATCCAAGTTTGA 2322 0.4651 MTVTPKISINDGKLVVHGKTILTGVADNVVLTPGSGRGLVTGAFIGATASHSKSLHVFPMGVLEGLRFMCCFRFKLWWMTQRMGTCGRDVPLETQFMLIESKESEVDGENSPIIYTVLLPLLEGQFRAVLQGNDKNEIEICLESGDNEVETDQGLHMVYMHAGTNPFEVINQAVKAVEKHKQTFLHREKKRLPSFLDWFGWCTWDAFYTDVTAEGVEKGLKSLSEGGTPPRFLIIDDGWQQIESKPKDADCVVQEGAQFATKLTGIKENTKFQKKSQNNEQISGLKHLVDGAKQNHNVKNVYVWHALAGYWGGVKPAAAGMEHYDTALAYPVQSPGVLGNQPDIVMDSLAVHGLGLVHPKKVFNFYDELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYHHALEASIAHNFADNGCIACMCHNTDGLYSAKQTAVVRASDDFYPHDPASHTIHISSVAYNSLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCPIYVSDKPGNHNFDLLKKLVLPDGSVLRAQLPGRPTRDSLFADPARDGTSLLKIWNLNKCSGVVGVFNCQGAGWCKIEKKTRIHDTSPGTLTGSVCASDVDLITQVAGAEWLGETIVYAYKSGEVIRLPKGVSVPLTLKVLEFELFHICPIYEIAPSISFAAIGLLDMFNTGGAVEQVEIHRASNNKPELFDGEVLSELTSSLSPNRAATATIALRVRGRGRFGVYSSQRPLKCGVDGTETDFNYDSETGLTTFSIPVPPEEMYRWSIEIQV 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1477 773 Pfam Raffinose synthase or seed imbibition protein Sip1 7 756 IPR008811 -
Ssu4g1477 773 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 1 773 - -
Ssu4g1477 773 Gene3D Aldolase class I 198 520 IPR013785 -
Ssu4g1477 773 PANTHER - 1 773 IPR008811 -
Ssu4g1477 773 SUPERFAMILY (Trans)glycosidases 195 525 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1477 Ssu-Chr4 24694482 24698763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1477 1 556 Glycoside Hydrolase AT3G57520 81.867 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1477 K06617 - gmx:100807861 1447.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1477 4 24694482 24698763 Ssu4g1477 4 24694482 24698763 ECH
Ssu4g1477 4 24694482 24698763 Ssu7g2822 7 58967026 58971438 PCT