Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2715 ATGCTGAGCGTGGTGCGCGTGCACCTGCCCTCGGAAATTCCCATTGTAGGCTGCGAACTCACGCCGTACGTGCTCCTTCGCCGCCCCGACAAGACCGTTTCCACCGACGATGTTCCCGAAACCGCTCCCTTAGATGGCCATTTCTTGCGCTACAAGTGGTACCGTGTACAGAGTGATAAAAAAGTTGCTGTCTGTAGCATACATCCATCAGAGCAAGCCACACTGCAATGCCTAGGTTGTGTTAAGGCCAAAATACCTCTTTCCAAGAGTTACCATTGCACCACGAAGTGTTTTTCAGATGCTTGGCAGCATCATCGTGTCTTGCATGATCGTGCTGCAAGTGCTCTtaatgaaaatggaaatgaGGAGGAGGAGGTATTTGGGCGCTTTAATAGTACTGGGTCTGGGGCAGTCAATTCCAGCTTATCCGCCTCTGCATCAAGTGCTAGCTTGACAAATGGATCTGCAACACCTTTGTATCCAGCAGCTGTCACACAAAGAAGTGGAGAAACCTGGTTTGAAGTTGGACGATCTAAGACTTACACCCCTACAGCTGATGACGTTGGTCATGTCCTTAAGTTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTGCCTGTGGGGCATGTTAACACCATACTAACTTCACGTGTCATTCCTGCTCCCTCTCCTATTCCTCGCCGACTGATATCTGTTGATGGGATGGCGCATTTAGATGTGGATGGGCGAATGACATCTTCAGGAACTTTTTCTGTTCTATCATACAATATATTGTCTGAAGCATATGCCTCAAATGATTTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCCATATCGCAGGCAAAATTTGTTACGAGAAATTGTTGCTTACCGTGCAGACATTATTTGTCTTCAGGAGGTTCAAAGCGATCATTATGACGAATTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGTCTttacaagagaaaaacaaatgagGTGTACAGTGGCAACACAAATACAATTGATGGTTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTTAACAAGGCTGCACAGTCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAGACTGCCTTGAATCGACTGGTTAAGGATAATGTTGCACTAATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCGTTTGATAATCCTGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATGTAAACGTCCCTCAAGATTTAAAGGATGTGAAACTCTGGCaggTTCATACTCTCTTAAAAGGGTTGGAGAAAATAGCTGCAAGCGCAGACATTCcaatgttggtttgtggagatTTCAATTCAGTTCCAGGAAGTGCTCCTCATGCACTTCTTGCGATGGGGAAGGTAGATCCTTCACATCCTGATTTAGCAGTTGACCCACTTAACATTTTACGCCCTCACAGCAAGTTGGTTCATCAGTTACCACTGGTCAGTGCATACTCATCTTTTGCAAGAACAGTTGGCCTTGGGTATGAACAGCATAAAAGGAGACTGGATGGTGGAACAAATGAACCTTTATTCACAAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTACTGGATGAGGAGAGTTTGAGGAAGGACACTGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCTGAGTTTCGCTGCTGCAAGAATAAATCTAGGCGTTGA 1803 0.4287 MLSVVRVHLPSEIPIVGCELTPYVLLRRPDKTVSTDDVPETAPLDGHFLRYKWYRVQSDKKVAVCSIHPSEQATLQCLGCVKAKIPLSKSYHCTTKCFSDAWQHHRVLHDRAASALNENGNEEEEVFGRFNSTGSGAVNSSLSASASSASLTNGSATPLYPAAVTQRSGETWFEVGRSKTYTPTADDVGHVLKFECVVVDAETKLPVGHVNTILTSRVIPAPSPIPRRLISVDGMAHLDVDGRMTSSGTFSVLSYNILSEAYASNDLYNYCPSWALSWPYRRQNLLREIVAYRADIICLQEVQSDHYDEFFSPELDKHGYYGLYKRKTNEVYSGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEATIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPFDNPGKRQLLCVANTHVNVPQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGYEQHKRRLDGGTNEPLFTNVTRDFIGTLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKSRR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2715 600 Pfam Endonuclease/Exonuclease/phosphatase family 253 584 IPR005135 GO:0003824
Ssu7g2715 600 PANTHER CARBON CATABOLITE REPRESSOR-LIKE PROTEIN 36 597 - -
Ssu7g2715 600 CDD Deadenylase_CCR4 252 593 - -
Ssu7g2715 600 Gene3D Endonuclease/exonuclease/phosphatase 221 599 IPR036691 -
Ssu7g2715 600 SUPERFAMILY DNase I-like 245 594 IPR036691 -
Ssu7g2715 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 36 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2715 Ssu-Chr7 54798895 54806118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2715 278 476 EF-hand Containing Proteins AT5G54130 25.121 1.32e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2715 K12603 - gmx:100819402 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2715 7 54798895 54806118 Ssu7g2715 7 54798895 54806118 ECH
Ssu4g0718 4 11171842 11181803 Ssu7g2715 7 54798895 54806118 PCT