Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0718 ATGCTGAGCGTGCTGCGCGTGCACCTCCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTATGTGCTCCTACGCCGACCTGACAAGACCGTTGCCACCGACGATGTACCCGAAACCGCCCCGTTAGATGGCCATTTCTTGCGCTACACGTGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCATCTGAGCAGGCCACACTGCAGTGCCTAGGTTGTGTTAAGGCTAAAATACCTGTTGCCAAAAGTTACCACTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGACCGTGCTGCTAGTGCAGTtaatgaaaatggaaatgaGGAAGAAGAGTTATTTGGGCGATTTAATAATTCTGGATCTGGATCAATCAATACCAGCTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCACCTGTGTATCCAGTAGCCGTTACACAACGAAGTGGCGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACGTATACCCCAACAGCTGATGATATTGGTCATGTCCTTAAATTTGAGTGTGCTGTAGTTGATGTAGAGACCAAGCTTACTGTAGGGCATGTAAACACTCTACTAACTTCCCGTGTCATTCCTGCTCCCTCGCCTAGCCCACGCCAACTGATACCTGTTGATGGGATGGGACATTTGGATGCTGATGGGCATATAACATCTTCAGGAACTTTTACTGTTCTATCGTACAACATATTGTCTGATGCATATACCTCAAATGATCTATACAATTACTGCCCTTCATGGGCTCTTTCCTGGCCATATCGCAGACAAAATTTGTTACGAGAAATAGTTGGTTACCGTGCTGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCATtatgaagaatttttttctccTGAACTGGACAAACATGGCTATTATGGTCTTTACAAGAGGAAAACAAACGAGGTTGTATACAACGGCAACATTGATACAATTGATGGGTGTGCAACATTTTTTCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACTGGTTAAGGATAATGTTGCACTAATAGTGGTTTTAGAAGCAAAAGTTAACAATCAACCTGTTGATAACCCAGGGAAAAGACAGCTTCTTTGTGTGGCAAACACACATGTAAATGTCCACCAAGATTTAAAGGATGTCAAACTCTGGCAGGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCAAGTGCAGACATTCcaatgttggtttgtggggacttTAATTCAGTTCCAGGAAGTGCTCCTCACGCACTTCTTGCAATGGGGAAGGTAGATCCATCGCATCCTGATTTAGCAGTTGACCCACTTAATATATTGCGTCCTCACAGCAAGTTGGTTCACCAGTTGCCACTGGTCAGTGCTTATTCATCTTTTGCAAGAACAGTTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGACAACACAACAAATGAACCTTTATTCACAAATGTAACAAGAGATTTTATTGGCTCTCTTGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTGGAGCTATTGGACGAGGAAAGTTTGAGGAAAGACACAGCGCTTCCTTCTCCTGAATGGTCCTCAGATCATATAGCTCTGTTAGCTGAGTTTCGCTGCTGCAAGAATAGATCTAGGCGTTGA 1806 0.4203 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVATDDVPETAPLDGHFLRYTWYRVQSDKKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNNSGSGSINTSLSASASSASLTNGSAPVYPVAVTQRSGGETWFEVGRSKTYTPTADDIGHVLKFECAVVDVETKLTVGHVNTLLTSRVIPAPSPSPRQLIPVDGMGHLDADGHITSSGTFTVLSYNILSDAYTSNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKRKTNEVVYNGNIDTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTVGLGFEQHKRRLDNTTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0718 601 CDD Deadenylase_CCR4 252 594 - -
Ssu4g0718 601 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 596 - -
Ssu4g0718 601 Gene3D Endonuclease/exonuclease/phosphatase 219 600 IPR036691 -
Ssu4g0718 601 Pfam Endonuclease/Exonuclease/phosphatase family 253 585 IPR005135 GO:0003824
Ssu4g0718 601 SUPERFAMILY DNase I-like 246 595 IPR036691 -
Ssu4g0718 601 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0718 Ssu-Chr4 11171842 11181803 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0718 K12603 - gmx:100808935 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0718 4 11171842 11181803 Ssu7g2715 7 54798895 54806118 PCT