Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2705 ATGGATCTGCCTACAACCGATGTGGACCTTGGGCCTAAGAAGATTGAGCCTGAGAAAGTGGAAGGTCCCTTGTTCCATTGTGATTTTTGTGACACAGAGGTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTCTGCCTGTGTTGATAGCACAACAGGAGATCCCTTCAAGAGCCCTGGATCAGTGGCTGTTGATTTGAGAAAGGAGATGATAGATTGTGTTACCCAAAAGAGTGAATCATTTGTTGCTGAGTCTGTTATCTTAGAGGGTGGTCCTGATGATGAAGTGTTAGAACACCCTTTTGatatcatttcttattttgttgatGAGTTTGTTAATTCAAAGAGGAATTTGTTGAGTCAGGTTTCAGGGTGGCTGCTGAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAGGAGATGGAAATGAATGGATTTTGGTCACTGGATAGAAGAGAAGCAGTTGCAAAAACTTTGCTCAAGAATGTTGACTTCAAGAGCTCATTTCACTGCAGCATGAGTTTCAACTCTGCACAAGATCTTACCAACCATGTTGATGGTTGCAACTTCAGGCCTATGATCTGCCAAAATGAGGGGTGCAATGCCAGATTCTGTGCTGGCCATTTGAAGGAGCATGATTCAACTTGTGCTTTCAAGGTAGTTCCATGTGAACAGAAGTGCACAGATAGCATTATGAGACGTGAGATGGATAAACACTGCATAACTGTTTGTCCAATGAAGCTTGTGAATTGCCCTTTCTATGCAGTGGGTTGTAGATCTGCTATTGCACAAAGTATGATTAGAAAACATTGTTCAGATGACATTGAGTCTCACTTATTGCACATGCTTAAAGGCATTCACCAGGAAGCATCAGGTGAAGATCTTCAAAGACGTGTAGAGCAAATTATACAGGCATCATCAAGAAGCAAATTAGCAGAGGCTAAGGATGTgagatcttttaaaaatattgtcaagGACCTTGAAGTTAAGCTAGGGCCTCTGGAATTGAGTGCCAAAGAGAAAACTAATGCAGAAACAGTTTCCAAGAATGAAGATAGTGAAGACACTAGCACCAAAACAAAGGGCAAGGAGCAGCACACACAAGCTTTGAATTCATTGAATGAAGCTGAAGTGAGTGCCATCTTGGATAAGACTTGTGCAGAGAATGCTGTCAAAATAGAAGATTGTGAACATAAGGAAAATGGAAAGCAAGGGTAG 1230 0.4065 MDLPTTDVDLGPKKIEPEKVEGPLFHCDFCDTEVVHKLAQMFLPGLASACVDSTTGDPFKSPGSVAVDLRKEMIDCVTQKSESFVAESVILEGGPDDEVLEHPFDIISYFVDEFVNSKRNLLSQVSGWLLSDKREDKIDDFVQEMEMNGFWSLDRREAVAKTLLKNVDFKSSFHCSMSFNSAQDLTNHVDGCNFRPMICQNEGCNARFCAGHLKEHDSTCAFKVVPCEQKCTDSIMRREMDKHCITVCPMKLVNCPFYAVGCRSAIAQSMIRKHCSDDIESHLLHMLKGIHQEASGEDLQRRVEQIIQASSRSKLAEAKDVRSFKNIVKDLEVKLGPLELSAKEKTNAETVSKNEDSEDTSTKTKGKEQHTQALNSLNEAEVSAILDKTCAENAVKIEDCEHKENGKQG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2705 409 MobiDBLite consensus disorder prediction 346 366 - -
Ssu7g2705 409 MobiDBLite consensus disorder prediction 345 371 - -
Ssu7g2705 409 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Ssu7g2705 409 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
Ssu7g2705 409 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 357 IPR043211 -
Ssu7g2705 409 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 357 - -
Ssu7g2705 409 SUPERFAMILY TRAF domain-like 182 228 - -
Ssu7g2705 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 281 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2705 Ssu-Chr7 54508263 54510611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2705 - - gsj:114391789 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2705 7 54508263 54510611 Ssu7g2705 7 54508263 54510611 ECH
Ssu4g0736 4 11403055 11406807 Ssu7g2705 7 54508263 54510611 PCT