Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0736 ATGGACATGCCTACCATTGATGTGGACCTTGGGCCTGAGAAGCTTGAAGATGAGAAACAGGGAGGTCCCTTGTTGCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAAGACTAGCGAATGCTTGTGTTGATAACACATTAGGAGATCTCTTTAAGACTCCTGGTTCAGTGGCTGTTGATTTGAGAAAGGAAATGATAGAGTATCTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTCTTATATTGGAAGGTGGTCCAGATGATGAAGTATTGGACCATCCTTTTgatatcatttcaaattttgttgatgactttgTGAGTTCAAAGAGGAATTTGTTTAGCCGGGTTTCAGGATGGTTGTTGAGTGAAAAAAGGGAAGACAAAATAGATGACTTTGTTCAAGAGATGGAAATAAATGGGTTTTGGACACTTGACAAAAGAGAAACAATTGCAGAAactttgttaaaaaatgttgaCTTTGAGAACTCGTATCATTGCAACATGAGTTTTAATTCTACGGAAGAACTTGCCAATCATGTTGATAACTGTAACTTTAGATCTATGATCTGCGAAAATGAGGGATGCAATGCCAGATTTTGCGCATCTCATTTGAAGAAGCATGATTCAACTTGTCCTTTCAAGATAATTCAATGTGAACAGAAGTGTTCTAATAGTATCATGAGACGGGAGATGGACAGGCATTGTATAACTGTTTGTCCAATGAAGATTGTAAATTGTCCCTTTCATGCCGTGGGTTGCCAGTCAGCTATTGCACAATGTATGATTGAAAAACATCGTTCAGATGACATTCAGTCTCATTTGTGGCACTTGCTTAAAGGCATTCACAAGGAAGCATCTGGGGAATATCTTAAACGACGAGTGGAGCAAATTGTACAGGCATCATCGAGCAATCGTTTAGCAGAGGCACGAGATGTTAGATCTTTAAACTTCATTGTCAAGGATATTGAAGTTAAGCTAGGACCTTTCAAAGTGAGTGCTGAGGATAAAAATAATGCAGAAGTTGTTGCTAAGAATGGTGATAAGGAAGATGGTGACACTAATATGAACAACAATGAACAGAGTATAAAAGCCTCAAATATGGTTAATTCATCAGATGAAGCTGAAGTGAGTGACATGATGAATATGAATAATGTAGAAAATACTACCAAGAACAAATATAATGAACCTAGTCCTGTTGCAAACAAAGGCATTAAAGAAAGGACACAGACTTCAAATATGGAAAATTTATCTGATAAAACTGAAATCAGCATCTTGAATGATAAGAACATAAATGATGTAGCTAGTGAATTAAAAACCAAAGGCAACGAAGAGAGCACTCAAACAAATATGGAAAAAGTATCAAATGAAGAAGTTGGTGCCACAAATGAGGGCAATGCAGAGAATAACATCAAATGCAAATCTAATGAAGATAGTAAATTCGAAGATAAGGACAACGAAAAGAGCATACAGAATTCAAGAATGGAAATTAAGGGTGGTGCGGAGAATAATGTTAAGAACAAAGATATTGAAGATGGTGGCTTAAAAAAGAGCATACAAACTCCAGAAGTGTAA 1599 0.3602 MDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVVHKLAQMFLPRLANACVDNTLGDLFKTPGSVAVDLRKEMIEYLTQRSESFVAESLILEGGPDDEVLDHPFDIISNFVDDFVSSKRNLFSRVSGWLLSEKREDKIDDFVQEMEINGFWTLDKRETIAETLLKNVDFENSYHCNMSFNSTEELANHVDNCNFRSMICENEGCNARFCASHLKKHDSTCPFKIIQCEQKCSNSIMRREMDRHCITVCPMKIVNCPFHAVGCQSAIAQCMIEKHRSDDIQSHLWHLLKGIHKEASGEYLKRRVEQIVQASSSNRLAEARDVRSLNFIVKDIEVKLGPFKVSAEDKNNAEVVAKNGDKEDGDTNMNNNEQSIKASNMVNSSDEAEVSDMMNMNNVENTTKNKYNEPSPVANKGIKERTQTSNMENLSDKTEISILNDKNINDVASELKTKGNEESTQTNMEKVSNEEVGATNEGNAENNIKCKSNEDSKFEDKDNEKSIQNSRMEIKGGAENNVKNKDIEDGGLKKSIQTPEV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0736 532 MobiDBLite consensus disorder prediction 449 478 - -
Ssu4g0736 532 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 400 - -
Ssu4g0736 532 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 400 IPR043211 -
Ssu4g0736 532 MobiDBLite consensus disorder prediction 509 526 - -
Ssu4g0736 532 MobiDBLite consensus disorder prediction 448 532 - -
Ssu4g0736 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 281 IPR013083 -
Ssu4g0736 532 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Ssu4g0736 532 ProSiteProfiles Zinc finger TRAF-type profile. 211 262 IPR001293 GO:0008270
Ssu4g0736 532 MobiDBLite consensus disorder prediction 479 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0736 Ssu-Chr4 11403055 11406807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0736 - - gmx:100799182 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0736 4 11403055 11406807 Ssu4g0736 4 11403055 11406807 ECH
Ssu4g0736 4 11403055 11406807 Ssu7g2705 7 54508263 54510611 PCT