Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2693 ATGCAACCTCGAGGTCTGTCCTTAAGCAGACATTGCTTCCTCCTAAGCAATATTGACTTAGGGGCATTAAAGTCCTTGCAATtgccaccaccggagacatTTGTCACCACCATAGAAGTTCATCAAAgctctttcttccttttccttgtGCCCTACCTCACAACAATTGGTAGAATTTGGCAAGTTGTTGAAATGGCGAATCAGAACACAAGAGATAAGATGTTTGAGAAATTTACATGGACGATTAGGGACTTCTCTAAATTGGATAAGAAGCTGTACTCCGAGAAGTTTTCCCTCGATGGCCATACATGGCGAATTCTTATCTTTCCGAAGGGGAACAATGTGGACTACTTGTCAATTTATTTAGATGCTGCTGGAGATCTTGTTAATTTGCCTGATAACTGGAACAAATTTGCAAATTTCAAATTGGCTTTAATTAATCAGCTCAACAacgaaatgactaaaataagagAATGTGAACATTTGTTCGATGCAAGAAAACCTGATTGGGGTTTCCCATCATTCATACCTTTAGATGAACTTCGTAACTCTAGCAATGGGTTTATTGTGAATGATACATGTATAATTGAAGTTGAGATTTTGGTCAGTAAGTCAAAACATGAGAATCAACCAATTAGCAAGATTGATGATAAGCCTATTGAACGCACTGATAATCCTTTACCCAAAGAAATGTTCACAACATTTGGTGAGCTAGTGGATTTTAAGGGTTTAGGAAAAATAGAACAAGATTTTGTTCCACTATTAGAAGATGTATGTTTGCGACATCCTTCACTTATTGATAGTCAACAAAAGAGAACTCGTAGGTTTATTGAATGGGCATTCACAGCTTTAGGTCGAGTTCTACATTTTCTTAAGACTAAAAAAGTGAAAGATATGGGTGAAGATGCTTGTAATCATCTCCAAATTTTATGGGAGGAACTTAATATGTTTAGATTTGATTTGACTTGGTTGGAACCCCATGTTCAATCTGCCTTgggtatgaaaaattatatagagaGGGTTGTTCAGGTGAAAAAGTTGAAAGAGGATGTGGCTACCTTAGAGATGGAAACAAAAAGGTTGAAGGAAAAAATGATTGAAGCAGTGGTAAATCTTGAAATAGCAAGAAGAGACTTGGTGAAAGCAAATGAAGGCTTTGGAGAGTACAATTTGGATGCTGAACTAGGATATGAAGGATAA 1200 0.3433 MQPRGLSLSRHCFLLSNIDLGALKSLQLPPPETFVTTIEVHQSSFFLFLVPYLTTIGRIWQVVEMANQNTRDKMFEKFTWTIRDFSKLDKKLYSEKFSLDGHTWRILIFPKGNNVDYLSIYLDAAGDLVNLPDNWNKFANFKLALINQLNNEMTKIRECEHLFDARKPDWGFPSFIPLDELRNSSNGFIVNDTCIIEVEILVSKSKHENQPISKIDDKPIERTDNPLPKEMFTTFGELVDFKGLGKIEQDFVPLLEDVCLRHPSLIDSQQKRTRRFIEWAFTALGRVLHFLKTKKVKDMGEDACNHLQILWEELNMFRFDLTWLEPHVQSALGMKNYIERVVQVKKLKEDVATLEMETKRLKEKMIEAVVNLEIARRDLVKANEGFGEYNLDAELGYEG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2693 399 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 65 381 - -
Ssu7g2693 399 Pfam MATH domain 82 201 IPR002083 GO:0005515
Ssu7g2693 399 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 73 215 IPR008974 GO:0005515
Ssu7g2693 399 SUPERFAMILY TRAF domain-like 77 205 - -
Ssu7g2693 399 CDD MATH 77 200 IPR002083 GO:0005515
Ssu7g2693 399 Coils Coil 344 364 - -
Ssu7g2693 399 ProSiteProfiles MATH/TRAF domain profile. 75 200 IPR002083 GO:0005515
Ssu7g2693 399 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 65 381 - -
Ssu7g2693 399 SMART math_3 77 181 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2693 Ssu-Chr7 54271770 54280331 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2693 - - gmx:121172949 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2693 7 54271770 54280331 Ssu6g3213 6 73465111 73479500 ECH
Ssu7g2693 7 54271770 54280331 Ssu7g2693 7 54271770 54280331 ECH
Ssu4g0742 4 11486219 11487043 Ssu7g2693 7 54271770 54280331 PCT