Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3213 ATGACTGTGATGACTCCTGCTCCCATTGACCAGCAGCAGGAGGACGAGGAGATGCTTGTCCCGCACACGGATTTGCCTGAGAATAATCACCAACCCATGGAAGTTGTGGCTCAACCTGATGCTGCCAACACTGTGGAGAGTCAGCCTGTCGAGGATCCTTCATTGTCAAGATTCACGTGGAGAATTGACAACTTTTCTAGGATGAATACAAAAAAGCTCTATTCAGAAATATTTGTTGTTGGTGGTTATAAATGGCGTGTACTTATTTTCCCCAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCACCTAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTTGTTAATCAAATCCATAATAAATGCTCTCTGAGAAAAGACACGCAGCACCAATTCAATGCGCGAGAAAGTGATTGGGGCTTcacgtccttcatggcgcttgGTGAATTGTATGATCCTAGTAGAGGGTATCTTGTGAATGATACTCTTGTAGTTGAAGCCGAGGTTCTTGTTCGTAGAATTGTTGATTACTGGACTTATGATTCAAAAAAGGAGACTGGCTATGTTGGGCTTAAGAACCAGGGAGCTACATGTTATATGAATTCACTACTCCAAACTTTGTACCATATTCCTTATTTTCGAAAGGCTGTGTACCATATGCCAACAACAGAGAATGATATGCCCTCTGGAAGCATCCCTTTGGCTTTGCAAAGTTTATTCTACAAGCTCCAGTATAGTGACACCAGTGTTGCAACAAAGGAGCTCACAAAATCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTGAACAGAGTCCTTTGTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGGCATCATATGAACTATATTGAATGCATCAATGTGGACTATAAATCAACCAGAAAGGAGTCATTTTACGACCTTCAGCTTGATGTGAAAGGCTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAAGGGGACAACAAATATCATGCCGAACAATATGGTTTGCAGGATGCTAAGAAGGGTGTCCTATTCATTGACTTCCCTCCTGTTCTTCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGACCGTTATGAGTTTCCCTTGCAACTTGACCTTGATCGTGAGAATGGAAAATATTTATCACCTGAAGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGTGTTTTGGTTCACAGTGGTGGTGTGCATGGTGGACATTATTATGCTTTTATCAGGCCAACTCTCTCTGAGCAGTGGTATAAATTTGATGATGAGAGGGTGACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAGACAAATCCTGGATTTAACAACACTCCTTTTAAATTCACCAAATACTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAAGACAAAGTAATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAGGAAGAAAAAGagcacaaaaagaaagaaaaggcagAGGCTCACCTTTACACTATTATAAAGGTGGCACGAGATGAAGACCTTGCAGAGCAGATTGGAAaggatatatattttgatcttgTGGACCATGACAAAGTGAGGAGTTTCCGTGTCCAAAAGCAgacatcttttaatatttttaagGAAGAGGTTGCTAAAGAGTTTGGCATACCAGTTCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGGCAAAACCATACGTATCGTCCAAATCGACCATTGACACACATGGAGGAAGCACAATCTGTTGGACAATTGAGAGAGGTATCAAACAAGGTTCACAATGcagaattaaaattgtttttggaaGTGGAGCTTGGGCTGGATTTACGTCCCATTGCACCACTTGACAAGACAAAGGAcgatattttacttttcttcaagtTATATGATCCTGAAAAAGAGGAGCTACGTTATGTTGGAAGGCTCTTTGTGAAGAGTAGTGGTAAGCCATCAGAAATCTTAACGAGGTTAAATAAAATGGCTGGTTATGATCCTGATAAAGAGATTGGACTATATGAGGAAATTAAGTTTGAACCAAATGTTATGTGTGAACCTATTGATAAGAAAGTAACATTTCGAGCAAGCCAGTTAGAAGATGGGGATATTGTATGCTTTCAGAAAGCTCCTGCTATAGACACTGAGGAACATGTCCGCTATCCAGATGTGCCTTCATACCTAGAATATGTACACAATCGCCagGTTGTTCACTTTCGATCTCTAGATAAACCCAAGGAAGATGACTTCTGCCTGGAGATGTCAAGGCTCTATACATATGACGATGTGGTGGAGAGAGTTGCTCAACAACTTGGTTTGGACGATCCATCCATAATTAGGCTTACCCCTCACAATTGCTACTCTCAACAACCAAAACCCCAGCCTATTAAGTATCGTGGTGTGGAACATTTGTCTGATATGCTGGTTCACTACAATCAGACTTCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTGCAAGGTTTGAAAACTCTGAAAGTCGCATTTCACCATGCTACAAAGGATGAAGTGGTTATTCATACCATCAGACTCCCAAAGCAGAGCACTGTGGGGGATGTCCTTGATGATCTGAAAACAAAGGTGGAATTGTCTGATCCTGAAGCTGAGCTTAGGTTGCTTGAAGTTTTCTATCACAAGATATACAAGGTCTTCCCTCCCAATGAAAAGATTGAAAACATCAATGATCAATACTGGACATTACGTGCAGAGGAGATTccggaagaagagaaaaatgtggGTCCTCATGATCGTTTAATCCATGTGTATCATTTCACTAAAGACACTGCTCAGAACCAaatgCAAATTCAGAACTTCGGGGAACCTTTTTTCTTGGTGATACATGAAGGGGAGACTTTGGCTGAAATTAAAGTGCGAATACAGAAGAAACTTCAAGTTCCTGATGATGAGTTTGTCAAGTGGAAATTTGCTTTTTTCTCTTTAGGACGTCCTGAGTACCTTCAGGATCCTGACATTGTATCCACTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTTAACCAGAATCGCCACACTTTTGAGAAGCCCGTAAAGATTTATAATTAG 3360 0.3905 MTVMTPAPIDQQQEDEEMLVPHTDLPENNHQPMEVVAQPDAANTVESQPVEDPSLSRFTWRIDNFSRMNTKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSPSLPYGWSRYAQFSLAVVNQIHNKCSLRKDTQHQFNARESDWGFTSFMALGELYDPSRGYLVNDTLVVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPEADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLAEQIGKDIYFDLVDHDKVRSFRVQKQTSFNIFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTHMEEAQSVGQLREVSNKVHNAELKLFLEVELGLDLRPIAPLDKTKDDILLFFKLYDPEKEELRYVGRLFVKSSGKPSEILTRLNKMAGYDPDKEIGLYEEIKFEPNVMCEPIDKKVTFRASQLEDGDIVCFQKAPAIDTEEHVRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYTYDDVVERVAQQLGLDDPSIIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSDPEAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNVGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLAEIKVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLQDPDIVSTRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3213 1119 SMART math_3 57 161 IPR002083 GO:0005515
Ssu6g3213 1119 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 54 196 IPR008974 GO:0005515
Ssu6g3213 1119 CDD MATH 57 180 IPR002083 GO:0005515
Ssu6g3213 1119 ProSiteProfiles MATH/TRAF domain profile. 55 180 IPR002083 GO:0005515
Ssu6g3213 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 440 457 IPR018200 GO:0004843|GO:0006511
Ssu6g3213 1119 Pfam Ubiquitin-specific protease C-terminal 887 1097 IPR029346 -
Ssu6g3213 1119 Gene3D - 685 802 - -
Ssu6g3213 1119 SUPERFAMILY TRAF domain-like 57 185 - -
Ssu6g3213 1119 Gene3D Cysteine proteinases 197 525 - -
Ssu6g3213 1119 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 625 877 IPR024729 -
Ssu6g3213 1119 CDD peptidase_C19C 198 524 - -
Ssu6g3213 1119 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 1044 - -
Ssu6g3213 1119 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 1044 - -
Ssu6g3213 1119 Pfam MATH domain 62 181 IPR002083 GO:0005515
Ssu6g3213 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 201 216 IPR018200 GO:0004843|GO:0006511
Ssu6g3213 1119 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 200 524 IPR028889 -
Ssu6g3213 1119 Coils Coil 533 564 - -
Ssu6g3213 1119 Gene3D - 803 900 - -
Ssu6g3213 1119 SUPERFAMILY Cysteine proteinases 195 552 IPR038765 -
Ssu6g3213 1119 Pfam Ubiquitin carboxyl-terminal hydrolase 200 521 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3213 Ssu-Chr6 73465111 73479500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3213 200 489 Miscellaneous Gene Families AT2G24640 24.290 2.25e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3213 K11838 - gmx:100800328 2191.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2693 7 54271770 54280331 Ssu6g3213 6 73465111 73479500 ECH
Ssu6g3213 6 73465111 73479500 Ssu6g3213 6 73465111 73479500 ECH