Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2689 ATGGATTCGGAAGTAGTCCCATCTTCCAGGGATTTGTTGAAATGTTGCAACTGTGGATGTGGTTGCTCCTTGTTAGCTCAATCTTCGGGGACTTGGATGCGATCCGTTAAACGGAAGCACGATGAGTTCAAGTTGGATGACCAGTTGCCCATGCCCGTGTTTGCGCGGGTTGAAATTGAGAATGAATGTGTGGCCTTACGCGAGATGGTCGGTATGCAGCAGAAAACTATTCAAGATTTGAATGCTGAGTTGGAGGAGGAGAGGAATTCTTCGTCCACGGCAGCGAATGAGGCCATGTCTATGATATTGAGGCTGCAGAGGGAAAAGGCGGAGGTGCAAATGGAGGCGCGCCAATTCAAGCGGTTTGCGGAGGAGAAGATGACACATGATCAGGAGGAGCTTCTATCTTTGGAAGATTTGTTGTATAAGAGAGAACAGATAATTCAGGCACTTACTTGTGAAGTTCAGGCTTACAAACACAGGTTGATGAGTTTTGGCTTTACCGAGGCTGAGGTTGAGGGTGATCAATGTGAACTGCCAACCTTTGAATACCCTCCTTTGAAATGTAATGTGATGCATGGTGGTATGGATGCTGATAATGACGATATGGATGTAGAGAAGTATGCATTTGGTGAAACGCCGAGTGACAGTTTGAGGAACTTGGAAAATAGGATTTCTCAAATGGAGAAAACTCCCACTTACAGCCAGATGGATGGGGATTTTACAGGGAAAAATATTCTAGAGAAAGTGGTTGTTGGACAGTCTCCAAGTCAGACCAAACATTCAAGGAAATTTTCCTGTGACTCATCATTTGGTGGGATAGGAAAAGAAACAGGTCCTGAGTTTATGATGGATTCTCCCAGGCTCAATAGTAACTATAGGAAGGATTGTTTCTCACAGTCAGAGGATCATTCCAATTTCAAGAAGGTAGATAACGCATCAGAAGGGGATGATATGAGTGACAGAATTTACACAATTGACTCTGTTCATTGTGGGGCACCTTATGATGGTTTCACAGATTCCAAAGCTGGAGCTGGTGGTTTCGAAGATTATGCAACCACTCCAAGGGAGTCAGGGGATCATGCTACTGATTTTGAGGATCCCTACATAAAGAAGCTTTACGTGAGGCTTCAGGCTCTTGAGGCTGATAGGGAATCAATGAGGCAGGCAATCATTTCAATGCGCACAGATAAAGCACAGCTGGTGTTACTGAAGGAAATAGCTCAACATCTGTGCAAAGAGATGTCACCGCAAAGAAAAATGGCAAGGAAACCATGTTTTGCTGGCAACTCTTCATTCTTGtcaatttttaagTGGGTCTCATCAATTGTTTTCTGGAGAAAGAAAGCTTGTCAAAGCAAGTACATGTTCGGGCTACCACCTGAAAGTGTGGGCTTGCTGATGCTCCTCGACAAAGGAACACGCTCAAGGCCATGGAGATGCGTTTCAAGTACACAAGTGGGggattaa 1470 0.4429 MDSEVVPSSRDLLKCCNCGCGCSLLAQSSGTWMRSVKRKHDEFKLDDQLPMPVFARVEIENECVALREMVGMQQKTIQDLNAELEEERNSSSTAANEAMSMILRLQREKAEVQMEARQFKRFAEEKMTHDQEELLSLEDLLYKREQIIQALTCEVQAYKHRLMSFGFTEAEVEGDQCELPTFEYPPLKCNVMHGGMDADNDDMDVEKYAFGETPSDSLRNLENRISQMEKTPTYSQMDGDFTGKNILEKVVVGQSPSQTKHSRKFSCDSSFGGIGKETGPEFMMDSPRLNSNYRKDCFSQSEDHSNFKKVDNASEGDDMSDRIYTIDSVHCGAPYDGFTDSKAGAGGFEDYATTPRESGDHATDFEDPYIKKLYVRLQALEADRESMRQAIISMRTDKAQLVLLKEIAQHLCKEMSPQRKMARKPCFAGNSSFLSIFKWVSSIVFWRKKACQSKYMFGLPPESVGLLMLLDKGTRSRPWRCVSSTQVGD 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2689 489 Coils Coil 370 397 - -
Ssu7g2689 489 ProSiteProfiles GTD-binding domain profile. 61 159 IPR007656 -
Ssu7g2689 489 PANTHER ZEIN-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 8 464 - -
Ssu7g2689 489 Pfam Zein-binding 65 155 IPR007656 -
Ssu7g2689 489 PANTHER BNAANNG28530D PROTEIN 8 464 - -
Ssu7g2689 489 Coils Coil 70 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2689 Ssu-Chr7 53995865 53998929 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2689 - - aprc:113872114 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2689 7 53995865 53998929 Ssu7g2689 7 53995865 53998929 ECH
Ssu4g0753 4 11625523 11627772 Ssu7g2689 7 53995865 53998929 PCT