Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2629 atgaCTCCTTTGCACATTTTCACCCTCCTCTTTCTCCTATCCATCATCACCTTCACTTCCTCATCCACACCCGACACCATCACCCTCCCCCTCTCTCCCTTATTCGCCAAACACCCCTCTTCACGCCCATTCCACGCCCTCCAACTCGCGGTCTCCACTTCCATCACCAGAGCCCGCCACCTCAAAAACCACAAACCCAACGTCGACAACAACCCCCCTCCGCTCAAAACCCCAGTTCACCCCAAAAGCTACGGAGGATACTCCATCGACCTCAAATTCGGGACCCCACCGCAAACCTTCTCCTTCGTCCTCGACACCGGCAGCACCCTCGTCTGGCTCCCGTGCTCCTCCCACTACCTCTGCTCCAAATGCAACTCCTTCCCGAACACAACGAAAACCACCCCCACATTCATCCCCAGAACCTCGTCCTCCTCGAAGTTCGTAGGTTGTCGCAACCCCAAATGCGCGTGGGTCTTCGGCCCCAACGTTCGATCGCGCTGCTGCCAACAAAACGCCGCCAACTGCTCCCGAAACTGCCCTGCCTACACCGTCCAATACGGACTCGGCTCCACCGCGGGCTTTTTGCTCTCGGAAAATCTCAATTTTCCCGGGAAAATCGTCCCCGATTTTCTCGTCGGCTGCTCCGTCGTCTCCGTCTACCAGCCCGCCGGAATCGCCGGGTTCGGCCGCGGCCCGGAGTCCGTCCCGTCGCAGATGAACCTCACCAGATTCTCTTACTGTTTACCGTCTCACCGGCTCGACGACTCACCGGCGAGCGGCGAGCTCGTCTTGGAAAGCGCCTCCTCCGGTGGCGACTCAAAAACTGACGGCGTCGGCTACACGCCGTTTCGGAAAAACCCGTCGTCGAAGAACCCCATGTTCGGCGCGTACTACTACGTCACGCTTGGGAAAATCGTCGTCGGGGAGAAGCGCGTGAGGGTTCCGAAGAGGTTGCTGGAACCCGACGCCAACGGTGACGGTGGGTCAATCGTGGACTCCGGCTCCACGTTAACGTTCATGGAGAGGCCCATTTACGATCTGGTGGCCCAGGAGTTTGGGAGGCAGGTGAACTACACGCGCGCGAGGGAGGTTGAGAGGCAATCGGGGTTGAGTCCGTGTTTTGTGGTGTCCGGCGCGGGAACGGCGTCGTTTCCGGAGCTTGGGTTTGAGTTCAGGGGCGGCGCGAAGATGAGACTGCCGCTGACGAATTATTTTTCGTTGGTGGGGAAATCCGACGTGGCGTGTTTGACGATCGTGTCTGATGACGTGGCGGGGCCGGCCGGGGCGGGGGGCCCGGCTGTGATATTGGGGAACTATCAGATGCAGAATTTCTATGTTGTGTATGACTTGGAGAATGAGAGGTTTGGGTTTCAGAGTCAGAGTTGTAAAACGAGCGTTTAG 1401 0.5832 MTPLHIFTLLFLLSIITFTSSSTPDTITLPLSPLFAKHPSSRPFHALQLAVSTSITRARHLKNHKPNVDNNPPPLKTPVHPKSYGGYSIDLKFGTPPQTFSFVLDTGSTLVWLPCSSHYLCSKCNSFPNTTKTTPTFIPRTSSSSKFVGCRNPKCAWVFGPNVRSRCCQQNAANCSRNCPAYTVQYGLGSTAGFLLSENLNFPGKIVPDFLVGCSVVSVYQPAGIAGFGRGPESVPSQMNLTRFSYCLPSHRLDDSPASGELVLESASSGGDSKTDGVGYTPFRKNPSSKNPMFGAYYYVTLGKIVVGEKRVRVPKRLLEPDANGDGGSIVDSGSTLTFMERPIYDLVAQEFGRQVNYTRAREVERQSGLSPCFVVSGAGTASFPELGFEFRGGAKMRLPLTNYFSLVGKSDVACLTIVSDDVAGPAGAGGPAVILGNYQMQNFYVVYDLENERFGFQSQSCKTSV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2629 466 CDD pepsin_A_like_plant 86 462 IPR034161 -
Ssu7g2629 466 Gene3D Acid Proteases 64 264 IPR021109 -
Ssu7g2629 466 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 102 113 IPR001969 GO:0004190|GO:0006508
Ssu7g2629 466 PRINTS Pepsin (A1) aspartic protease family signature 329 340 IPR001461 GO:0004190|GO:0006508
Ssu7g2629 466 PRINTS Pepsin (A1) aspartic protease family signature 93 113 IPR001461 GO:0004190|GO:0006508
Ssu7g2629 466 PRINTS Pepsin (A1) aspartic protease family signature 434 449 IPR001461 GO:0004190|GO:0006508
Ssu7g2629 466 Gene3D Acid Proteases 267 466 IPR021109 -
Ssu7g2629 466 PANTHER BNACNNG47670D PROTEIN 5 462 - -
Ssu7g2629 466 SUPERFAMILY Acid proteases 80 462 IPR021109 -
Ssu7g2629 466 Pfam Xylanase inhibitor C-terminal 298 458 IPR032799 -
Ssu7g2629 466 Pfam Xylanase inhibitor N-terminal 87 262 IPR032861 -
Ssu7g2629 466 PANTHER OS07G0603500 PROTEIN-RELATED 5 462 - -
Ssu7g2629 466 ProSiteProfiles Peptidase family A1 domain profile. 87 458 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2629 Ssu-Chr7 52119941 52121341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2629 74 462 Miscellaneous Gene Families AT1G44130 24.279 4.87e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2629 - - gmx:100808552 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2629 7 52119941 52121341 Ssu7g2629 7 52119941 52121341 ECH
Ssu4g0803 4 12497350 12498684 Ssu7g2629 7 52119941 52121341 PCT