Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0803 ATGGCTCCTCCTtacattattctctttttactcGCTCTTCTCTCTCACACCGCATTCACTTCATCCACCCCCAACACCATCACTCTCCCTCTCTCCCCTCTGCTCACGAAATCCCCATCCTCAGATCCCTTCCACTCCCTCAAACTCGCCGCCTCCACTTCCCTAACCCGGGCCCACCACCTCAAACACCGCAACACTCCCCCCTCCCTCGTCACGACCCCAGTGTACCCCAAAGGCTACGGAGGCTACTCCATAGATCTCAGCTTCGGAACCCCACCCCAAACCTCTCCCTTCGTCCTCGACACAGGAAGCAGCCTCGTCTGGTTCCCCTGCACCTCCCGCTACCTCTGCTCCCACTGCCTCTTCCCGCACATCGACCCCACCAAAATCCCCACCTTCATTCCCAAAAACTCCTCCACCGCCAAGCTCCTCGGCTGCCGCAACCCCAAATGCGGCTACCTCTTCGGCCCCGACGTCCAATCCCGCTGCCCCCAATGCAATCCCGTATCGCAGAACTGTTCCCTCACGTGTCCCCCTTACATAATCCAATACGGCTCCGGCTCCACCGCCGGCTTCTTACTCCTCGACAACCTCGATTTCCCCGGAAAAACCGTCCCCGATATTCTCGTCGGCTGCTCCATCCTCTCCATCCGCCAACCCTCCGGAATCGCCGGCTTCGGACGCGGCCAGGAGTCTCTCCCATCACAGATGGGTCTCAAGAGATTCTCCTACTGCCTAGTTTCCCACCGCTTCGACGACTCGCCGGAAAACAGCGACCTCGTTCTGCAGATTAGCTCCACCGGCGGCGCCAAAACCGACGGCCTCAGCTACACGCCGTTCCGCCCGAACCCCTCCGCGAACAACTCCGCGTTCCGCGAGTATTACTATGTCACCCTGCGCAAGGTCATTGTCGGGGGCCAGCGCGTTAAGATTCCGTTTAAGTTCTTGGAGCCGGATTCTGAGGGCAACGGGGGCGCCATCGTGGACTCTGGCAGCACCTTCACGTTCATGGAGCGGGCCGTTTACGATTTGGTGGCCCAAGAGTTTGTGAAGCAGTTGGGGAATTATTCACGTGCCAAGGACGTTGAGGCCCAATCCGGGTTGAGTCCCTGTTTTAATGTTTCCAGCCTGGCGACGGTGAGTTTCCCCGAGTTGGACTTTTCAGTTCAAAGGCGGCGCCAAAATGACGTTGCCGGTTGCGAATTATTTCTCGCTGGTCGGCGGTTCGGAGGTGCTGTGTCTGACCGTTGTCTCCGACGGAGGTGTCGGTCCGGCGAAGACCACCGGTCCGGCCATCATCTTGGGGAACTATCAGCAGCAGAATTTCTACGTTGA 1335 0.5805 MAPPYIILFLLALLSHTAFTSSTPNTITLPLSPLLTKSPSSDPFHSLKLAASTSLTRAHHLKHRNTPPSLVTTPVYPKGYGGYSIDLSFGTPPQTSPFVLDTGSSLVWFPCTSRYLCSHCLFPHIDPTKIPTFIPKNSSTAKLLGCRNPKCGYLFGPDVQSRCPQCNPVSQNCSLTCPPYIIQYGSGSTAGFLLLDNLDFPGKTVPDILVGCSILSIRQPSGIAGFGRGQESLPSQMGLKRFSYCLVSHRFDDSPENSDLVLQISSTGGAKTDGLSYTPFRPNPSANNSAFREYYYVTLRKVIVGGQRVKIPFKFLEPDSEGNGGAIVDSGSTFTFMERAVYDLVAQEFVKQLGNYSRAKDVEAQSGLSPCFNVSSLATVSFPELDFSVQRRRQNDVAGCELFLAGRRFGGAVSDRCLRRRCRSGEDHRSGHHLGELSAAEFLR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0803 444 ProSiteProfiles Peptidase family A1 domain profile. 83 444 IPR033121 -
Ssu4g0803 444 SUPERFAMILY Acid proteases 76 390 IPR021109 -
Ssu4g0803 444 Pfam Xylanase inhibitor N-terminal 83 250 IPR032861 -
Ssu4g0803 444 PANTHER OS07G0603500 PROTEIN-RELATED 5 389 - -
Ssu4g0803 444 Coils Coil 444 444 - -
Ssu4g0803 444 CDD pepsin_A_like_plant 82 342 IPR034161 -
Ssu4g0803 444 Pfam Xylanase inhibitor C-terminal 295 395 IPR032799 -
Ssu4g0803 444 Gene3D Acid Proteases 58 255 IPR021109 -
Ssu4g0803 444 Gene3D Acid Proteases 263 407 IPR021109 -
Ssu4g0803 444 PANTHER BNACNNG47670D PROTEIN 5 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0803 Ssu-Chr4 12497350 12498684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0803 68 249 Miscellaneous Gene Families AT1G44130 34.146 9.33e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0803 - - gmx:100788618 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0803 4 12497350 12498684 Ssu4g0803 4 12497350 12498684 ECH
Ssu4g0803 4 12497350 12498684 Ssu7g2629 7 52119941 52121341 PCT