Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2628 ATGGAAGAGACCAAATCCAAGTTCAAGAGGATTTGTGTGTACTGTGGGAGCAGTTCCGGTAACAAAGCTAGTTACCAAGAAGCTGCTGTGGAACTAGGCAAGGAGCTGGTTGAGAGAAGGATTGATTTGGTCTATGGAGGTGGTAGCGTGGGGTTAATGGGTCTCGTTTCTCAGGCAGTTCATGATGGTGGGCGCCATGTTCTGGGCGTTATCCCAAGAAGTCTCATGCCAAGAGAGATAACTGGTGATCCTATTGGGGAAGTGAGAGCCGTATCTGATATGCATCAAAGGAAAGCTGAGATGGCTCGTCAAGCTGATGCCTTCATTGCCCTTCCTGGGGGATATGGAACACTTGAAGAATTGCTGGAAATCATTACATGGGCTCAGCTTGGGATCCACAGCAAACCGGTGGGCCTGTTGAATGTGGATGGATTTTACAATTCCTTGTTGTCTTTCATTGACAAGGCCGTTGATGAGGGCTTTATTTCCCCAAAGGCACGTCGCATTATCGTGTCAGCACCCACAGCCAAAGAATTGGTGAGGGAGCTAGAGGAACATGTACCCGAGCGAGATGAAGTTGTATCCAAGTTGGTGTGGGAAGACAGACTAAATTACGTGCCTGAATCAGAAGTTGCCATGTGA 642 0.4813 MEETKSKFKRICVYCGSSSGNKASYQEAAVELGKELVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPRSLMPREITGDPIGEVRAVSDMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHSKPVGLLNVDGFYNSLLSFIDKAVDEGFISPKARRIIVSAPTAKELVRELEEHVPERDEVVSKLVWEDRLNYVPESEVAM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2628 213 Pfam Possible lysine decarboxylase 53 182 IPR031100 -
Ssu7g2628 213 Gene3D - 1 185 - -
Ssu7g2628 213 PANTHER LOG FAMILY PROTEIN YJL055W 4 211 - -
Ssu7g2628 213 SUPERFAMILY MCP/YpsA-like 7 186 - -
Ssu7g2628 213 TIGRFAM TIGR00730: TIGR00730 family protein 9 185 IPR005269 GO:0009691|GO:0016787
Ssu7g2628 213 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG7 4 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2628 Ssu-Chr7 51985373 51989486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2628 K22522 - gmx:100816928 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0804 4 12512204 12517720 Ssu7g2628 7 51985373 51989486 PCT