Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0804 ATGGAAAAGACCAAATCCAGGTTCAAGAGGATTTGCGTCTTCTGTGGGAGCAGTTCAGGGAAGAAAGCTACCTACCAAGAAGCCGCTGTTGAACTTGGCAGGGAGCTGGTGGAAAGAAGGATTGATTTGGTCTATGGAGGTGGTAGCGTGGGGCTGATGGGTCTCGTTTCTCAGGCAGTTCATGATGGTGGGCGCCATGTTCTAGGGGTTATCCCAACAAGTCTTATGCCAAGAGAGATAACAGGTGATCCAATTGGGGAAGTGAGAGCCGTATCTAATATGCACCAAAGGAAAGCCGAGATGGCCCGACAAGCCGATGCCTTTATTGCCCTCCCTGGAGGATATGGAACCCTTGAAGAATTACTGGAAGTCATTACATGGGCTCAGCTTGGAATCCACAGCAAACCCGTGGGCCTGTTGAATGTGGATGGATTTTACAATTCCTTGTTGTCTTTCATTGACAAGGCCGTTGATGAAGGTTTTATATCCCCTACGGCACGTCGCATTATCGAACATGTTCCTGAGCAAGATGAGTTTGCGTCCAAGTTGGTGTGGGAAGAAAGACTGAAGTACGTGACTGAATCAGAAGTTGCCATGTGA 600 0.4833 MEKTKSRFKRICVFCGSSSGKKATYQEAAVELGRELVERRIDLVYGGGSVGLMGLVSQAVHDGGRHVLGVIPTSLMPREITGDPIGEVRAVSNMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHSKPVGLLNVDGFYNSLLSFIDKAVDEGFISPTARRIIEHVPEQDEFASKLVWEERLKYVTESEVAM 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0804 199 Pfam Possible lysine decarboxylase 53 182 IPR031100 -
Ssu4g0804 199 Gene3D - 1 184 - -
Ssu4g0804 199 TIGRFAM TIGR00730: TIGR00730 family protein 9 180 IPR005269 GO:0009691|GO:0016787
Ssu4g0804 199 PANTHER LOG FAMILY PROTEIN YJL055W 4 197 - -
Ssu4g0804 199 SUPERFAMILY MCP/YpsA-like 7 183 - -
Ssu4g0804 199 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE LOG7 4 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0804 Ssu-Chr4 12512204 12517720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0804 K22522 - gmx:100792663 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0804 4 12512204 12517720 Ssu4g0804 4 12512204 12517720 ECH
Ssu4g0804 4 12512204 12517720 Ssu7g2628 7 51985373 51989486 PCT