Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2517 ATGGGCGCGTCGCTGTCGAACCTCGGCGCGAAAGGTTCGAGCATCGGTCCGGGCCTCGGGGACATACCGGAGAGTTGCGTGGCGCGCGTGTTCCTCCACCTAACGCCGCCGGAGATTTGCAACCTCGCGCGTCTCAGCCGGGCGTTCCGCGGCGCCGCCTCCTCGGACTCCGTCTGGGAGGCCAAGCTGCCGCGCAACTACCAGGACCTGCTCGATCTGGTGCCGCCGGAGCGCCACCGGAACCTCTCCAAGAAGGACATTTTCGCGCTCCTCTCGCGCCCGGTGCCCTTCGACCACGGCCATAAGGAAGTGTGGCTGGACAGGGTCACGGGGAGGGTTTGCATGTCTATTTCCACGAAGGCGATGGCGATTACTGGAATTGATGACCGCAGATACTGGAATTGGATTCCTACTGAAGAATCTAGCACTATTGCAAATCTTGATGTGGAAGCTGCTTTGTTTTCCATTTGTTCTGGCTTCACCTTGGACGGTTTTCCAAAAGGACTTGGACGGCGTGTTTGCAATTATGAACATACCCATGGTTGGGATATAAAACCTGTGAAATTTGAGTTGTCTACTTCAGATGGTCAGCAAGCATCATGTGAATGCTGTTTGGAAGAAACTGAGCTTGATGATACATATGGCAATCATAAGCGTAGATACTGGGTAGATTACAAGTGGGTGAGTTTATCGTCAGTGGATCAGAGCCTACAACTCAAGTTAGATTTTCCATGA 735 0.5361 MGASLSNLGAKGSSIGPGLGDIPESCVARVFLHLTPPEICNLARLSRAFRGAASSDSVWEAKLPRNYQDLLDLVPPERHRNLSKKDIFALLSRPVPFDHGHKEVWLDRVTGRVCMSISTKAMAITGIDDRRYWNWIPTEESSTIANLDVEAALFSICSGFTLDGFPKGLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASCECCLEETELDDTYGNHKRRYWVDYKWVSLSSVDQSLQLKLDFP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2517 244 SUPERFAMILY F-box domain 17 87 IPR036047 GO:0005515
Ssu7g2517 244 Pfam Phloem protein 2 113 230 IPR025886 -
Ssu7g2517 244 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 228 - -
Ssu7g2517 244 SMART fbox_2 22 62 IPR001810 GO:0005515
Ssu7g2517 244 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Ssu7g2517 244 Gene3D - 18 115 - -
Ssu7g2517 244 PANTHER F-BOX PROTEIN PP2-A15 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2517 Ssu-Chr7 49341961 49347346 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2517 - - vra:106772440 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0923 4 14693330 14697227 Ssu7g2517 7 49341961 49347346 PCT