Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0923 ATGGGGGCCTCGCTGTCGAGCCTCGGGAGCAACGGTTCGGCCGCCGCTCCGGGCCTCGGCGACATCCCGGAGAACTGCGTCGCGCGCGTCTTCCTGCACCTCACTCCGCCGGAGATATGCAACCTGGCGCGGCTGAACCGCGCGTTTCGCGGCGCCGCCTCCGCGGATTCCGTGTGGGAGGCGAAGCTGCCGCGCAACTACCAAGATCTGCTCGATTTGATGCCTCCCGAGAGGCACCGGAATCTCTCCAAGAAGGACATCTTCGCGCTGCTGTCTCGCCCGGTCCCCTTCGACGACGGCAACAAGGAAGTGTGGCTGGACAGGGTCACGGGAAGGGTTTGCGTGTCGATTTCGGCGAAGGCCTTGTCTATTACGGGAATTGATGATCGGAGATACTGGACTTGGGTTCCCACTGAAGAATCTAGGTTCAACACTGTAGCATATCTGCAGCAAATATGGTGGTTTGAAGTGGATGGGGAGATCACCTTCCCATTTCCTGCTGATATTTATACTCTCTCCTTTAGGCTTCACCTTGGACGATTTTCCAAGAGGCTTGGTCGACGTGTGTGCAATTATGAACACACCCATGGTTGGGATATAAAACCAGTGAAATTTGAGTTGTCAACCTTGGATGGTCAGCAAGCATCATTTGAGTGCTGCTTGGATGAAAATGAACATGATGATGCACACAGCAATCATAAGCGCGGACATTGGGTAGATTACAAGGTGGGTGAGTTTATTGTCAATGGATCAGAACCTACTACTAAAGTTAGATTCTCCATGAAACAGATTGATTGTACACACTCTAAAGATGAGATGGATACAGAAGCAGGAAAACAAACTTTGCTGACACTTGCTTTTGCTGGCCTGTTCCTTCTGGAACTTAATTGTGATGCTGTAGTAGATTTTCGTCACCTGATATTGTGCCTACCATCAGGTATTGACACAATTTTTGAATAG 960 0.5083 MGASLSSLGSNGSAAAPGLGDIPENCVARVFLHLTPPEICNLARLNRAFRGAASADSVWEAKLPRNYQDLLDLMPPERHRNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCVSISAKALSITGIDDRRYWTWVPTEESRFNTVAYLQQIWWFEVDGEITFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTLDGQQASFECCLDENEHDDAHSNHKRGHWVDYKVGEFIVNGSEPTTKVRFSMKQIDCTHSKDEMDTEAGKQTLLTLAFAGLFLLELNCDAVVDFRHLILCLPSGIDTIFE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0923 319 ProSiteProfiles F-box domain profile. 16 62 IPR001810 GO:0005515
Ssu4g0923 319 Pfam Phloem protein 2 113 271 IPR025886 -
Ssu4g0923 319 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 273 - -
Ssu4g0923 319 SUPERFAMILY F-box domain 15 87 IPR036047 GO:0005515
Ssu4g0923 319 PANTHER F-BOX PROTEIN PP2-A15 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0923 Ssu-Chr4 14693330 14697227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0923 - - gmx:100807328 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0923 4 14693330 14697227 Ssu4g0923 4 14693330 14697227 ECH
Ssu4g0923 4 14693330 14697227 Ssu7g2517 7 49341961 49347346 PCT