Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2512 ATGGCGTCGACGCAACAAGAGCAACAAGCCGAGGCAGCCGCAAAACTTGCTGCCAAAGATCTCTGCCAAGTTAACAGAGAAAGGGAAAGCGATTTGGGTGCCGCGGACCAACAAAAGCGCGGTGTAATTGGGTCGGTCATGAGAGCAGTGCAAGACACCTACGAGAACGCTAAGGAAGCGGTGGTCGGTAAGAAAGACCCTGCGAAAAATTCGTACACTACAGAGGTAGTTCACGATGTTAATGTTCAACCTGATGACGTGGCAACGGGGGAAGTGAGAGACATATCGGCCACCAAGTCTCCCGGGATCTGTGATTCTGCCTCGGACAAAGCCGGTTCCGAGGTGGGAGAGTACACAGATTGTGCGTCTCAGAAGGCGAAGGGAACAAAAGACGCAACGAAGCAAAAGGCTGGAGAGTACACAGATTACGCGTCTGGGAAAGCAAAGGAGACGAAGGACGCAACGGAGCAGAAGGCTGGGGAGTGCGCAGATTATGCGTCTCAGAAGGCGAAGGAGGCAAAGGACAGGACAATGGAGAAGGGTGGGGAGTACAAGGAGTATGCAGCGGAGAAGGCTAAAGAAGGAAAGGACGCTACGGTGAATAAGATGGGAGAGTACAAGGACTACACCGCGGAGAAGGCAAAAGAAGGGAAAGATACCACTACGGGGAAGCTTGGGGAGCTGAAGGACTCTGCTGCGGATGCAGCTAAGAGGGCTATGGGTTACTTGAGCGGCAAGAAAGAGGAAACCAAAGAGAAGGCCGCTGAAACTGCGGAGGCAACGAAGAACAAGACTGCGGAGAACGCTGAGGCGGCGACGAATAAGGCTGTGGAGATGAAGGATGCAGCCAAGGACAAGGCAGCAGAGACAACTGAGGCAGCAAAACAGAAAACTGCTGAGGCAAAGGAGAAGACCAAGGAAAATGTGAGTGGTGCAGATGAAGCTGCCAGGAGGAAAATGGAAGAACTAAGGCTGCAAGGAAAAGGGTATGGAGAGGAATGTGAGGGGCGTGGAGATAAGGTGGTGTTTAAAGTGGAAGAGAGTCGATCAGGGGCGATGGCGGAAACGCTGAAAGCGGCGGATCAGATTGCGGGACAGACCTTCAACGATGTGGGACGCTTGGATGAAGAGGGGGTCGTCAGTGTGGACCGccgtaaaaaataa 1164 0.5266 MASTQQEQQAEAAAKLAAKDLCQVNRERESDLGAADQQKRGVIGSVMRAVQDTYENAKEAVVGKKDPAKNSYTTEVVHDVNVQPDDVATGEVRDISATKSPGICDSASDKAGSEVGEYTDCASQKAKGTKDATKQKAGEYTDYASGKAKETKDATEQKAGECADYASQKAKEAKDRTMEKGGEYKEYAAEKAKEGKDATVNKMGEYKDYTAEKAKEGKDTTTGKLGELKDSAADAAKRAMGYLSGKKEETKEKAAETAEATKNKTAENAEAATNKAVEMKDAAKDKAAETTEAAKQKTAEAKEKTKENVSGADEAARRKMEELRLQGKGYGEECEGRGDKVVFKVEESRSGAMAETLKAADQIAGQTFNDVGRLDEEGVVSVDRRKK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2512 387 MobiDBLite consensus disorder prediction 277 320 - -
Ssu7g2512 387 MobiDBLite consensus disorder prediction 241 320 - -
Ssu7g2512 387 MobiDBLite consensus disorder prediction 91 180 - -
Ssu7g2512 387 PANTHER DAUER UP-REGULATED-RELATED 1 155 - -
Ssu7g2512 387 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 1 155 - -
Ssu7g2512 387 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 157 387 - -
Ssu7g2512 387 Pfam Late embryogenesis abundant protein 119 161 IPR004238 -
Ssu7g2512 387 Pfam Late embryogenesis abundant protein 269 311 IPR004238 -
Ssu7g2512 387 Pfam Late embryogenesis abundant protein 207 239 IPR004238 -
Ssu7g2512 387 Pfam Late embryogenesis abundant protein 163 206 IPR004238 -
Ssu7g2512 387 Coils Coil 255 307 - -
Ssu7g2512 387 PANTHER DAUER UP-REGULATED-RELATED 157 387 - -
Ssu7g2512 387 MobiDBLite consensus disorder prediction 241 260 - -
Ssu7g2512 387 Gene3D - 165 211 - -
Ssu7g2512 387 Gene3D - 115 164 - -
Ssu7g2512 387 Gene3D - 277 333 - -
Ssu7g2512 387 MobiDBLite consensus disorder prediction 127 180 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2512 - - aprc:113873399 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2512 7 49180961 49182578 Ssu7g2512 7 49180961 49182578 ECH
Ssu4g0928 4 14773868 14774801 Ssu7g2512 7 49180961 49182578 PCT