Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2504 atgcgGTGCTGCATTCCGACGTTGCTGGCCGTAACCACCGTGCTGGTGTCTGTGGTGCACGTGCACGGCGGTTTCCTCCCTCTGGAGCGGAGCATTCCCCTGAGCCACCGCGTGGAGGTGGCGGCGCTAAGGACTCGCGACAGAGCCCGCCACACCCGAATGTTGCGCGGCGTGGCCGCCGGCGTCGTCGACTTCACAGTCCAAGGCACCTCCGATCCAAACAACGTTGGGTACGGGTTGTATTATACTAAAGTGAAGATGGGAACTCCTCCGAAGGAATTTAACGTTCAGATTGATACGGGAAGTGACATATTGTGGGTTAATTGCAATACTTGCAGTAATTGCCCTCAGTCTAGTGAACTAGGGATTGAGCTCAATTTCTTTGACACGGTTGGGTCGTCCACAGCTGCATTGGTTCCCTGCTCGGACCCTATATGCACTTATGGGGTTCAGGGTGCTGCTGCTGAGTGCTCCCCTCGGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCGGGTTACTATGTTTCGGATGCAATTTATTTTGACATGATCATGGGACAGTCTCCGCGGGCTAACTCTTCGGCCACCATTGTTTTTGGGTGTAGCACCTATCAGTCTGGAGATTTGACTAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTGTATCACAACTGTCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGCGATGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCCGTCAATGGACAACTCCTCCCAATTAATGCAGCTGTATTTGCAACATCTAACAACCGAGGAACTATAGTTGACTGTGGTACAACATTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTGAATGCAATAACTACTGCCGTGTCACAATCTGCTAGGCTCTCTAATTCCAAAGGAAACCCGTGTTATCTAGGTCTTAACCAGGTTATTACAAatacaatatttgttaaaaagattttcaaatggTTTTTCCTCATAAAGTTTTCCTATGAGGATTTCTCAATAATTCATTGGAATTTATGTTTTGCAGTATAG 1194 0.459 MRCCIPTLLAVTTVLVSVVHVHGGFLPLERSIPLSHRVEVAALRTRDRARHTRMLRGVAAGVVDFTVQGTSDPNNVGYGLYYTKVKMGTPPKEFNVQIDTGSDILWVNCNTCSNCPQSSELGIELNFFDTVGSSTAALVPCSDPICTYGVQGAAAECSPRVNQCSYTFQYGDGSGTSGYYVSDAIYFDMIMGQSPRANSSATIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDGDGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINAAVFATSNNRGTIVDCGTTLAYLVQEAYDPLVNAITTAVSQSARLSNSKGNPCYLGLNQVITNTIFVKKIFKWFFLIKFSYEDFSIIHWNLCFAV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2504 397 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Ssu7g2504 397 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 361 - -
Ssu7g2504 397 ProSiteProfiles Peptidase family A1 domain profile. 81 397 IPR033121 -
Ssu7g2504 397 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Ssu7g2504 397 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Ssu7g2504 397 PANTHER ASPARTYL PROTEASES 10 361 IPR001461 GO:0004190|GO:0006508
Ssu7g2504 397 SUPERFAMILY Acid proteases 74 343 IPR021109 -
Ssu7g2504 397 Gene3D Acid Proteases 64 266 IPR021109 -
Ssu7g2504 397 CDD pepsin_A_like_plant 81 334 IPR034161 -
Ssu7g2504 397 Gene3D Acid Proteases 267 383 IPR021109 -
Ssu7g2504 397 Pfam Xylanase inhibitor C-terminal 284 357 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2504 Ssu-Chr7 49089090 49092250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2504 79 337 Miscellaneous Gene Families AT1G44130 30.153 2.13e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2504 - - gmx:100820394 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2504 7 49089090 49092250 Ssu7g2504 7 49089090 49092250 ECH
Ssu4g0936 4 14919587 14927475 Ssu7g2504 7 49089090 49092250 PCT