Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0936 ATGCGGGGTCGTGTTCCCGTGTTGGTGGCGTTAGCCAccgtggtggtggcggcgacgGTGGCGTGCGGCGGTTTGGCGGGGACTTTTCTTCCTCTGGGACGGGCCATTCCTCTGAAGCAGCGAGTGGAGCTGGAGGCGCTGCGAGCTCGCGACAGAGCACGGCACTGTCGAATCTTGCAAGGCGCGGTCGGTGGCGTTGTCGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTCGTCGGGTACGGGTTGTATTTCACGAAAGTGAAGCTGGGATCTCCTGCCAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGCTAAATTGCATTACTTGCAGTAATTGCCCGCATTCTAGTGGGTTGGGGATTGAGCTCAATTTCTTTGACACAGCTGGGTCATCCACTGCTGCACTTGTTTCGTGCTCAGACCCGATATGTTCGAATGCGGTTCAAACTGCAACAAGTGAATGCTCTTCTCAGGCTAATCAGTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACGATGTATTTTGACACGATCCTCGGACAGTCTGTGGTTTCTAACTCATCATCTGCTATCGTATTTGGGTGTAGCACCTATCAGTCTGGAGATTTGACAAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGCGCTCTATCTGTTATATCACAATTGTCATCACGAGGTGTAACACCCAAAGTGTTCTCTCATTgcttaaaaggagaagaaaatggAGGAGGCGTACTAGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCTCAATTGATCCAGATGTATTTGCAACAGCTAACAATCGAGGAACGATAGTTGACTCTGGCACAACATTGGCATACCTTGTTCAAGAAGCTTACGATCCTTTTGTCACTGCTATAACCGCTGCTGTGTCACAGTTTTCAAAACCCATTATCTCAAAAGGAAACCAGTGTTATCTGGTATCAAACagTGTAAGTGATATATTTCCTCTAGTCAGTTTAAACTTCATGGGTGGGGCTTCTATGGTTCTAAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATAATGCTGCAATGTGGTGCATTGGCTTCCAAAAGGTGGAGGAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTATATGACTTAGCTAATCAACGAATTGGATGGGCCAATTATGATTGTTCCTTGGCTTTAAACGTCTCTGTGGCTACAAGCAAGGATGCATACATCAATTCAGGACAGATGAGTGTGAGCTGCTCCCACATACCCGCTTTCTCCAAGTTGCTAGCTGTAGGCATTGCTGCTTTCCTTGTGCACATAATAGTTTTCATGGACTCCCAATTTTTGTATACCACAGTCCAGGAGTCAAAGCTCATTCTTTGA 1530 0.4392 MRGRVPVLVALATVVVAATVACGGLAGTFLPLGRAIPLKQRVELEALRARDRARHCRILQGAVGGVVDFSVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCITCSNCPHSSGLGIELNFFDTAGSSTAALVSCSDPICSNAVQTATSECSSQANQCSYTFQYGDGSGTTGYYVSDTMYFDTILGQSVVSNSSSAIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGEENGGGVLVLGEILEPNIVYSPLVPSQPHYNLNLQSIAVNGQLLSIDPDVFATANNRGTIVDSGTTLAYLVQEAYDPFVTAITAAVSQFSKPIISKGNQCYLVSNSVSDIFPLVSLNFMGGASMVLNPEHYLMHYGFLDNAAMWCIGFQKVEEGFTILGDLVLKDKIVVYDLANQRIGWANYDCSLALNVSVATSKDAYINSGQMSVSCSHIPAFSKLLAVGIAAFLVHIIVFMDSQFLYTTVQESKLIL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0936 509 Gene3D Acid Proteases 272 449 IPR021109 -
Ssu4g0936 509 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
Ssu4g0936 509 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
Ssu4g0936 509 CDD pepsin_A_like_plant 85 443 IPR034161 -
Ssu4g0936 509 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Ssu4g0936 509 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Ssu4g0936 509 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Ssu4g0936 509 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Ssu4g0936 509 SUPERFAMILY Acid proteases 80 445 IPR021109 -
Ssu4g0936 509 Gene3D Acid Proteases 69 271 IPR021109 -
Ssu4g0936 509 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 462 - -
Ssu4g0936 509 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Ssu4g0936 509 PANTHER ASPARTYL PROTEASES 5 462 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0936 Ssu-Chr4 14919587 14927475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0936 83 444 Miscellaneous Gene Families AT1G44130 27.034 9.21e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0936 - - gmx:100804147 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0936 4 14919587 14927475 Ssu4g0936 4 14919587 14927475 ECH
Ssu4g0936 4 14919587 14927475 Ssu7g2504 7 49089090 49092250 PCT