Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2500 atgagttatatgattgagaaaattttaaaagatgactttaataagaaagaaagagaagttggattttattttctgaaaaggAAATTTCTCTGTCCCACGTTAGTGACAGAGAAAGGGCAACGCGTAGCGGAAGTCGTTGCTTCGGAGTTAAAGCGATACGACAATTTCAGAGTTCCAAACTTAACACACTGCAACCTCGTTGGTGCCGAAATTTCAAACGAAAACATGTCTACGAGATTTCGGGGATCACAAGAACACCAGCATGGCTCTTCTTCCAGTTCCAGCACCGGCAGCCACACTTCACACGTTCCCCCTGCCCAAGCTGCTGGACTTATTgctattttgaaagataaaagTGTTGATGAGTTGCGGAAGCTTTTATCTAACAAAGACGCGTATCAGCAGTTTTTAAGTTCACTTGATGAGGTCAAGATTCAAAATAATGTGAAAGATGAACTTTGCAAGGAGAATCAGAAGCTTGCCAatgaaaatctaaaaaaggAACCCCGTATGGTGGAACTCAGGAACCAGTATAGAATAATTTGTACGACTGAGTTAGCTGCTGCTCAAGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAGGAAATGTTGAAGTTGAATTCCTCACTATACCTTCTCCAAAGGATTCAAGAGGCTATAAATAAGACAGAAGAGGAATCTGAAAATCTGCACCAGCAAGTCCTTGACAGAGAGATTGACCTTGGAGCTTTTCTGCAGAAATACAAAAAGCTACGTGCCGCTTACCACAGGAAAAGTCTCATGCATCTTGCAGCTAAAACATCAAATATATGA 813 0.3678 MSYMIEKILKDDFNKKEREVGFYFLKRKFLCPTLVTEKGQRVAEVVASELKRYDNFRVPNLTHCNLVGAEISNENMSTRFRGSQEHQHGSSSSSSTGSHTSHVPPAQAAGLIAILKDKSVDELRKLLSNKDAYQQFLSSLDEVKIQNNVKDELCKENQKLANENLKKEPRMVELRNQYRIICTTELAAAQEKLNELEKQKEEMLKLNSSLYLLQRIQEAINKTEEESENLHQQVLDREIDLGAFLQKYKKLRAAYHRKSLMHLAAKTSNI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2500 270 MobiDBLite consensus disorder prediction 79 103 - -
Ssu7g2500 270 Pfam Modifier of rudimentary (Mod(r)) protein 116 259 IPR009851 -
Ssu7g2500 270 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 90 270 - -
Ssu7g2500 270 SUPERFAMILY Endosomal sorting complex assembly domain 210 258 IPR037202 -
Ssu7g2500 270 ProSiteProfiles VPS37 C-terminal domain profile. 190 270 IPR009851 -
Ssu7g2500 270 Coils Coil 213 233 - -
Ssu7g2500 270 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 90 270 - -
Ssu7g2500 270 Coils Coil 143 163 - -
Ssu7g2500 270 Gene3D Helix hairpin bin 194 264 IPR029012 -
Ssu7g2500 270 Coils Coil 179 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2500 Ssu-Chr7 49012573 49015988 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2500 K12185 - gmx:100797771 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0941 4 14959101 14963049 Ssu7g2500 7 49012573 49015988 PCT