Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0941 ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGATGAGTTCACCGAGTTCGTCGAGGCCTGTTACACCGACtgcatcttcttcttcttctttgcagAGGACTTCATCACATGTTCCGCCTTCCGAAGCCGCTGGAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGATTTACGGAAGCTTTTATCTGACAAAGATGCATATCAACAGTTTTTACATTCACTCGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACTGAGTTAGCTGCTGCAAAGGAGAAACTACATGAGCTTGAGAAGCAGAAAGAAGAAATGTTGAAGTTGAATTCCCCAGCATCCCTTCTCCAAAGGATTCAAGagTCTGTGAATAAGACAGAAGAGGAATCGGAAAATCTGCACCAGCATCTCCTTGACAGAGAGATTGACCTTGGGGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCATACATCTTGCTGCTAAAACATCAACAATATGA 666 0.4129 MFRFWGSQEQQSQDGSSQSQSWYPPSVMSSPSSSRPVTPTASSSSSLQRTSSHVPPSEAAGVIAVLKDKSVDDLRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLHELEKQKEEMLKLNSPASLLQRIQESVNKTEEESENLHQHLLDREIDLGAFLQKYKKLRTTYHRKTLIHLAAKTSTI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0941 221 ProSiteProfiles VPS37 C-terminal domain profile. 141 221 IPR009851 -
Ssu4g0941 221 Coils Coil 164 184 - -
Ssu4g0941 221 Gene3D Helix hairpin bin 143 214 IPR029012 -
Ssu4g0941 221 SUPERFAMILY Endosomal sorting complex assembly domain 159 209 IPR037202 -
Ssu4g0941 221 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 1 221 - -
Ssu4g0941 221 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 1 221 - -
Ssu4g0941 221 Pfam Modifier of rudimentary (Mod(r)) protein 67 210 IPR009851 -
Ssu4g0941 221 MobiDBLite consensus disorder prediction 1 55 - -
Ssu4g0941 221 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0941 Ssu-Chr4 14959101 14963049 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0941 K12185 - gmx:100305851 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0941 4 14959101 14963049 Ssu4g0941 4 14959101 14963049 ECH
Ssu4g0941 4 14959101 14963049 Ssu7g2500 7 49012573 49015988 PCT