Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2460 ATGGAAGCAGAGACTTTGAACGCTAATCATCCTCCCAGTTTTCTTCACCGGTCACTTCCTGCTGTTGTACCGATGCTTTTGATTTCTATAGGATATGTTGACCCAGGAAAGTGGGTGGCAATTGTTGACGGAGGTGCACGATTTGGGTTTGATATGATGGCCTTCGTGCTTATCTTCAATTTTGCAGCCATCTTCTGTCAGTGCATATCAGCAAAGATTGGTGTTATCACAGGAAAAGATCTTGCTCAGATTTGCAGTGATGAGTATGATAATTGGACATGCATGCTCCTTGGAGTTCAAACAGAACTTTCAGTGATTATGCTAGACCTTAACATGATATTGGGCATGGCACATGGATTAAATATTCTTCTTGGGTGGGACTTGTTCACTTGTGTCTTTTTAAGTGCTAGTGGTGCTGTTTTCCATCTCCTTCTTTTTGTCCTCCTTGACATTGAGAAGGCAAAGATCCTGGGCCTGTTTGTGTCAGGTTTTGTATTTCTTTCGTTTGTACTTGGAGTACTCATTAATCAACCAGAAATTCCATTATCCATTAATGGAATAATAACAAAGTTGAGTGGGGAGAGTGCATTTATGCTAATGAGTCTTCTAGGAGCAACTCTTGTGCCTCACAACTTTTACCTTCATTCCTCTATTGTACAGTGGCATCAGGGATCAACAACCATTTCTAAGGATGCTTTATGTCATAACCATTTTTTGGCCATCATATGTGTCTTCAGTGGCCTTTATTTGGTAAATAATGTGCTGATGAATGCTGCAGCAAATGAGTTCTACAGTATGGGTCTTGTTTTGACTACTTTTCAGGATGCATTATCGCCAATGGAACAGGTGTTACGTAGTCCAATAGCCATGCTTGCTTTTTTACTCATTctgtttttttcaaatcaaacaacagCATTAACTTGGAGTTTTGGTGGAGAAGTAGTTGTGCAGAGTTTCTTAAAATTGGATATTCCGGGTTGGCTTCATTACGCTACAATTAGAGTAATTGCTGTTCTGCCTGCCCTTTATTGTGTTTGGAGTTCAGGAGCTGAAGGGATGTATCAACTACTTATATTCACTCAGATTGTGGTAGCTCTGCAACTTCCATCTTCTGTGATCCCCCTTTTTCGGATTGCTTCATCTAGATCAATAATGGGGGTACACAAGATCCCTCAATTTGTGGAATTTTTGGCATTGATCATATTTATTGGGATGCTTGGCTTGAATATCGTCTTTGTTGTAGAAATGTTATTTGGCAATAGTGATTGGGTGGGCAATTTGAAATGGAATGTGGGGAACGgtgtctctctctcttattttgttcttctttgCACTGCTTTTGCATCATTCTGTCTGATGCTTTGGTTAGCTGCCATGCCTTTAAAATCTGCAAGTGTCCAATTAGATGATCCGGCATGGAATTGGGAAATGCCACAGGCCGTACCAAAACCATGGATTGATAATGAGGAAACAGATTTGAATGAAACAAGCTATCATGGAGATGCATCTGTTCAGGTGAAGGAACCATCAccaccagctctagcaaggacCCTGGAGTACCCAGATGTACCAGTTGCAAGTTTTCATCATGATCTACCTGAAACTATCATGGAGCCTGATGTTCCTGCGACTACTGTAATGGAGACTCATTCATTTACATCATTTCCTTGTTCCTCAACATCTGTTGTTAAGGAATCGACTTCCACTTCAGAATCAGAGGCAGTACCAGCTGGAAGTAATGAGACTTCTGAAATTAGATTGGGAGATgtcaaaactttaaaaatagaaactagTGCCCCTGTTGAGAAAACCGTAGAAGTTGAGGGAGATTCAAATGCCGAAAgggatgatgatgatggagatTCATGGGAAACTGAAGAAACACCAAAAGTAGTCTCACTAGCCCCATCTTCGGCATCAGATGGCCCAGCATCATTCAGGAGCCTTAGTGGGAAAAGTGATGATGGAGGGAATAGTATTGGAAGTCTTTCAAGATTAGCAGGCTTAGGGCGTGGTGCAAGACGTCAACTAGCTGCTATTCTTGATGAATTCTGGGGACAACTTTATGATTTCCATGGTCAATTTACCCAGGAAGCTAAGGCTAAGAAACTTGATGTTTTACTGGGAGTAGATTCAAAACTCACTGGTTCATTGCAGAAAATGGATGCATGTGGAAAGGAATATTCCGAATACTTAATATCTGTAGGAAGTAGAGCTCCAGATACTTTAATGAACTCTGCTCCATATGACTCTCCCAAGCAGCATAGGATGCAAAGTAATTTAGACTCTTCCTATGGGCCTCGAAGGAGTTATTCCTCACTGCGGGCAAATCCCGTCCAGTTTGTAGATGAATATGTTCAGACCTCCAGCCGCAGTCTCCTCAGTGCTGGTGAAAGGCGCTATTCCAGTGTGCGCAATCTACCTTCATCTGGGGCCTGGGATTATCAGCCAGCTACTATACATGGTTATCAGGTTGCATCGTATATGAATCAGGCTGGTAAAGACACAAATTCTGATAACTTAAATGGTCTGATGGAATTGTCTCCACTGAAATCCCCTTCCATGGGTAATACAAACAACTACAGGAATTATATTGCACTTGCTTTGGGGCCAAAGTTGCAAAATGGTTCAGGTTTAAGCCAACCACCAGGGTTCCAGAACATTGCTGTCTCTAAGAATAATAGCCAACTGTCATCTGAGAGGTCCCATTATGATTCTCGCCCTTCTGGACCTGCGGATAATGCAGTCAGTTCATTTAATGCTAAGAAGTACCACAGCTTGCCAGACATTTCGGGATATGCCATCCCTCACAGGGATGCTTATATGTCTGATAAGAGTGCTCCATGGGATGGTACTGTCGGTGGATATGGATCTTCTGCAAGTAGGACTCATTATGAACCttcattatattcaaattctggATCGAGGACAGGAGCTCCTTTACCCTTTGATGTACTCTCTCCATCAAAAGTCTACAGTGATGTACTTTCTTCTCAGTTGAGTTCTGGTTTTGGTACTGGATCCCTCTGGTCCAGACAGCCTTTTGAGCAGTTTGGGGTggatgataaaatttataatgctGCAACAGAAGATGTTGTAAATAGGCCTAGTGCAACTACTCAAGAAACTACTTCGGTTGCGGATATAGATGGCAAACTTCTTCAATCTTTTAGACATTGTATTCTGAAACTCTTAAAATTGGAAGGGTCTGATTGGTTGTTTAGACAGAATGATGGGGCTGATGAAGATCTGATTGATCGTGTTGCTGCAAGGgagaaatttgtttttgaagttGAAACCTCTGAGATGAACCGGGCCAATCATATGGGAGAAGCTCGTTATTTTTCTTCTGATGGGAAGTCTTGTTCTTCAATGAAGAATAATGAGGTAAATTGGTCAAGTTTTTCTGTGACCTCAATCCCTAACTGTGGGGAAGGATGTGTATGGAGAGCAGAGATAATAATAAGCTTTGGGGTGTGGTGTATCCACCGTGTTCTTGACCTCTCACTAATGGAGAGCCGGCCAGAGCTGTGGGGGAAGTACACTTATGTACTCAATCGCCTCCAGGGCATCATTGATCTGGCTTTTTCCAAGCCTCGTAGTCCCTCGACCGCGTGCTTTTGCCTTCAAGTTCCCATGACATACCAGCAAAAGTCAAGCTCGCCTCCTTCCAATGGGATGCTGCCCCCTGCTGCAAAACCAGGCCGTGGAAAATGCACAACTGCGTCAGTGGTGTTTGAGATGGTCAAGGATGTCGAGATAGCAATCTCTAGCCGGAAAGGTCGTACCGGAACTGCAGCTGGTGATGTAGCTTTCCCAAGGGGAAAGGAAAATTTGGCATCTGTTCTCAAACGGTATAAGCGTAGATTATCCAATAAACTAGTTGGCACTCAAGAAGGGATTCGCAAGATTCCCACATCAGCACCATACAGCTTGTAG 3939 0.4113 MEAETLNANHPPSFLHRSLPAVVPMLLISIGYVDPGKWVAIVDGGARFGFDMMAFVLIFNFAAIFCQCISAKIGVITGKDLAQICSDEYDNWTCMLLGVQTELSVIMLDLNMILGMAHGLNILLGWDLFTCVFLSASGAVFHLLLFVLLDIEKAKILGLFVSGFVFLSFVLGVLINQPEIPLSINGIITKLSGESAFMLMSLLGATLVPHNFYLHSSIVQWHQGSTTISKDALCHNHFLAIICVFSGLYLVNNVLMNAAANEFYSMGLVLTTFQDALSPMEQVLRSPIAMLAFLLILFFSNQTTALTWSFGGEVVVQSFLKLDIPGWLHYATIRVIAVLPALYCVWSSGAEGMYQLLIFTQIVVALQLPSSVIPLFRIASSRSIMGVHKIPQFVEFLALIIFIGMLGLNIVFVVEMLFGNSDWVGNLKWNVGNGVSLSYFVLLCTAFASFCLMLWLAAMPLKSASVQLDDPAWNWEMPQAVPKPWIDNEETDLNETSYHGDASVQVKEPSPPALARTLEYPDVPVASFHHDLPETIMEPDVPATTVMETHSFTSFPCSSTSVVKESTSTSESEAVPAGSNETSEIRLGDVKTLKIETSAPVEKTVEVEGDSNAERDDDDGDSWETEETPKVVSLAPSSASDGPASFRSLSGKSDDGGNSIGSLSRLAGLGRGARRQLAAILDEFWGQLYDFHGQFTQEAKAKKLDVLLGVDSKLTGSLQKMDACGKEYSEYLISVGSRAPDTLMNSAPYDSPKQHRMQSNLDSSYGPRRSYSSLRANPVQFVDEYVQTSSRSLLSAGERRYSSVRNLPSSGAWDYQPATIHGYQVASYMNQAGKDTNSDNLNGLMELSPLKSPSMGNTNNYRNYIALALGPKLQNGSGLSQPPGFQNIAVSKNNSQLSSERSHYDSRPSGPADNAVSSFNAKKYHSLPDISGYAIPHRDAYMSDKSAPWDGTVGGYGSSASRTHYEPSLYSNSGSRTGAPLPFDVLSPSKVYSDVLSSQLSSGFGTGSLWSRQPFEQFGVDDKIYNAATEDVVNRPSATTQETTSVADIDGKLLQSFRHCILKLLKLEGSDWLFRQNDGADEDLIDRVAAREKFVFEVETSEMNRANHMGEARYFSSDGKSCSSMKNNEVNWSSFSVTSIPNCGEGCVWRAEIIISFGVWCIHRVLDLSLMESRPELWGKYTYVLNRLQGIIDLAFSKPRSPSTACFCLQVPMTYQQKSSSPPSNGMLPPAAKPGRGKCTTASVVFEMVKDVEIAISSRKGRTGTAAGDVAFPRGKENLASVLKRYKRRLSNKLVGTQEGIRKIPTSAPYSL 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2460 1312 MobiDBLite consensus disorder prediction 557 583 - -
Ssu7g2460 1312 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 14 1197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu7g2460 1312 MobiDBLite consensus disorder prediction 557 579 - -
Ssu7g2460 1312 MobiDBLite consensus disorder prediction 877 917 - -
Ssu7g2460 1312 PANTHER ETHYLENE-INSENSITIVE PROTEIN 2 14 1197 - -
Ssu7g2460 1312 MobiDBLite consensus disorder prediction 743 769 - -
Ssu7g2460 1312 PIRSF EIN2 1 1310 IPR017187 GO:0009873
Ssu7g2460 1312 MobiDBLite consensus disorder prediction 631 654 - -
Ssu7g2460 1312 Pfam Natural resistance-associated macrophage protein 38 390 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu7g2460 1312 MobiDBLite consensus disorder prediction 597 654 - -
Ssu7g2460 1312 MobiDBLite consensus disorder prediction 747 769 - -
Ssu7g2460 1312 PRINTS Natural resistance-associated macrophage protein signature 361 380 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu7g2460 1312 PRINTS Natural resistance-associated macrophage protein signature 301 320 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu7g2460 1312 PRINTS Natural resistance-associated macrophage protein signature 97 123 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu7g2460 1312 PRINTS Natural resistance-associated macrophage protein signature 199 222 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu7g2460 1312 PRINTS Natural resistance-associated macrophage protein signature 329 346 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2460 Ssu-Chr7 47915369 47922551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2460 1 1303 Miscellaneous Gene Families AT5G03280 52.489 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2460 - K14513 gmx:100801190 2294.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2460 7 47915369 47922551 Ssu7g2460 7 47915369 47922551 ECH
Ssu4g1016 4 16279049 16290935 Ssu7g2460 7 47915369 47922551 PCT