Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1016 ATGGAAGCAGAGGCATCGAGTACTGACCGTCCTCCTAGCTTTCTTCGTCAGTCACTTCCTGCTGTTGTACCTATGCTTTTAATTTCAACCGGATATGTTGACCCTGGAAAGTGGGTAGTAACTGTTGAAGGTGGTGCACGGTTTGGGTTTGATCTGATGGCTTTCAtgcttattttcaattttgctGCTATCTTCTGTCAGTACATATCTGCAAGGATTGGTGTAATTACTGGAAAAAATCTAGCTCAGATTTGCAGTGATGAGTATGATACATGGACATGCATGCTCCTTGGAATTCAAACAGAACTTTCAGTGATAATGCTAGACCTTAACATGATCTTGGGCATGGCACAAggattaaatcttatttttgggTGGGACTTGTTCACTTGTGTTTTTTTAACTGCTACTGGTGCTGTTTTTCATATACTTCTCACAGTCCTACTTGATGTTGAAAAGGCAAAAATCCTAGCCCAGTTTGTTGCAGGCtttgtattgctttcttttATACTTGGACTGCTTATCAATCAACCGGAAATTCCATTTTCCATGAATGGAATACTAACAAGGCTGAGTGGGGAGAGTTCATTTGTGCTGATGAGTCTTTTAGGAGCAAATCTTGTGCCTCACAACTTTTACCTTCATTCCTCCGTTGTACAGtGGCATCAGGGACTGACAAGCATTTCTAAGAATGCTTTGTGTCATAACCATTTTTGGGCCATATTATGTGTTTTCAGTGGTCTTTATTTGGTAAATAATATGCTGATGACCACTTCAGCAAATGAGTTCTACAGTACAGGTCCTGTTCTGCTTACTTTTCAGGATGCATTGTCACCAATGGAACAGGTCTTACGTGGCCCAATAGCTCTGCTAGGGTTTTTGCTCATTTTGTTTCTTGCAAATCAAACCATAGCATTAACTTGGAGTTTAGGCGGAGAAGTAGTAGTGCGTGGTTTCTTAAAATTGGATATTCCAGGTTGGCTTCATTATGCTACAATTAGAGTGATTGCTGTTTTGCCTGCCCTTTATTGTGTCTGGAGTTCAGGGGCTGAAGGGATGTATCAGCTACTTATATTCACTCAAGTTTTGGTAGCTCTGCAACTTCCATCTTTTGTAATCCCCCTTTTTCGAGTTGCTACATCTAGATCAATAATGGGTGTACACAAGATTTCCCAGTTTATGGAACTTTTGGCATTGATCATATTTATTGGGATGCTTGGCTTGAATATTGTCTTTGTGGTAGAAATGATATTCAGCAATAGTGATTGGGCAAGTGATTTGAGATGGAATGTGGGGAGTGGTGTGTCTGTCTCATATTTAGTTCTTCTTACCGCTGCTTTTACATCGTTATGTTTGATGCTTTGGTTAGCTGCCACACCTTTAAGATCTGCCAGTGTCCAATTAGATGCTCAAACATGGAACTGGGATATGCCAGAGACTCTACCAAATCCACCAGTTGTTGATGAGGAATCATATTTAACTGAAACAAGGTGTCGTGAAGATGCATCTATGCGTGTGGAGGAACCGACACAAGCTGTAGCAAAGACCTTGGAGTACTCAGATGTATCACTTCCAACTTTTCATCCTGATCTACCTGAATCTATAATGGAACCTGATCCCCGTGTGAATGCTGTAAGGGAGAATCATTCTATTACATCAGCTTCCACATCAGAGTCAGAGGCAGTGTCAACTGTAGTCAATGAGATTTCTGATTCTCGATTGGAAGacaccaaaattataaaaatggaaagaaatacCCCAATTGAGAAAACTATGGAAGTTGAAGGAGATTTAAATGCTGAAagggatgatgatgatggtgattcATGGGAAGCTGAAGAACCTTCCAGAGTGGTATCAGCAAGTGTCCCATCTTCGACATCAGATGGCCCTGCATCATTCAGGAGTGTTAATGGGAAAAGTGATGAAGGAGGGAATAGCTTTGGAAGCCTTTTGAGAATAGAAGGCTTAGGGCGTGCAGCAAGGCGTCAGCTAGCTGCTGTTCTTGATGAATTCTGGGGACAACTATATGATTTCCATGGGCAAGTAACCCAGGAAGCAAAGGCTAAGAAAATTGACCTTTTGCTGGGAGTGGGTGTAGATTCAAGACCCACCAGTTCCTTGCAAAAAGTGGATGCATGTGGAAAGGACTATTCTGAATACTTAGTATCTGTAGGAGGTAGAGCTTCTGACACTTTGATGAACTCCGCTCCATATGATTTTTCCAAGCAGCCTAGGATGCAAAGTAATTCAGAGTCTTCTTATGGCCTTCAAAGGAGTTCTTCCTCAATGCGGGCAAATCCCATCCAATTATTGGATGCATATGTACAGAACTCTAGCCACAATCTCCTTGATTCTAGTGAGAGGCGCTATTCCAGTGTGCGCAATCTACATTCATCTGAGGCTTGGGATTATCAACCAGCTACCATACATGGTTATCAGACTGCATCCTATCTTAGCCGGCTTGGTAAAGACAGAAATTCTTATAACTTGAATGGTCCGGTGGACTTGTTATCACTGCAATCCCATTCCATAGGTAATACAAACCACAGGGATTCACTTGCATTTGCTTTGGGGAAAAAGTTGCATAGTGGTTCAGGTGTAGGCCAACCCCCAGGGTTCCCAAACATAGCTGTCTCTAGAAATTGTCAATTACAATCTGAGAGGTCCTATAATGATTTTTGCTCTTCTGGATCTGCAGATAATACAGTCAATTCAGTTAATACTAAAAAGTACCACAGTTTGCCGGACATTTCAGGATACTCCATCCCCCAAAGGGCTGGTTATGCGTCTGCTAAAAATGCTCCATGGGATGGTTCTGTTGGATATGGATCTTTTGCTAGTAGGACGTGTTATGACCAATCATTATATTCAGATTCTGGATTGAGAACAGGAGGTCATTTGGCCTTTGATGAACTCTCTTCATCTAAAGTTTACAATGAGGCACTCTCTTCACAGTTGAGTTCTGGTTTTGATTCTGGATCCCTCTGGTCTAGACAGCCTTATGAGCAGTTTGGGGTAACCGAGAAAATTCATAATGTTGCAATGGAAGGTGTTGGAAATAGGCCTAATGCAATTATTCAAGAAACTACTTCATTTGTGGATATAGAGCAGAAACTACTTCAGTCTGTTAGACTTTGCATTGTCAAGCTCTTAAAACTGGAGGGGTCTGATTGGTTGTTTAGACAGAATGGTGGAGCTGATGAGGATCTAATAGATTGTGTTGCTACAAGGGAGAAGTTTGTTTATGAAATTGAAACTAGGGAGATGAACCAGGTCATTCATATGGGTGAAGCTCATTATTTTCCTTCCGATAGGAAATTTGGTTcttcaatgaaaaataatgaggCATATTCCTCAAGTTTTTTGGTGTCCTCAGTTCCTAATTGCGGGGAGGGATGTATATGGAGATCAGATTTAATAATAAGCTTTGGGGTGTGGTGTATCCATCGTATTCTTAACCTTTCACTTGTAGAAAGCCGGCCAGAGCTTTGGGGGAAATACACCTATGTTCTCAATCGCCTCCagGGCATCATTGATCCAGCTTTTCTTAAGCCACGTAGTCCCCTGGCCCCATGCTTTTGCCTTCAAGTTCCAATGACACATCAGCAAAAGTCAAGCCCCCGCTTTTCAAATGGGATGCTACCCCCAACTGCAAAACCAGGCCGGGGCAAATGCACAACTGTATCAACGTTGCTTGAACTTATCAGGGATGTGGAGCTTGCAATCTATAGCAGGAAAGGACGTACAGGAACTGCTGCTGGTGATGTGGCTTTCCCTAAAGGGAAGGAAAATTTGGCGTCTGTTCTCAAACGGTACAAGCGGAGGTTATCCAACAAGCCCGTTGGCACTAATGAAGGGACAGGTTCACGCAAGATCCCCACGTTAGCACTCTACAACCAATAG 3906 0.4112 MEAEASSTDRPPSFLRQSLPAVVPMLLISTGYVDPGKWVVTVEGGARFGFDLMAFMLIFNFAAIFCQYISARIGVITGKNLAQICSDEYDTWTCMLLGIQTELSVIMLDLNMILGMAQGLNLIFGWDLFTCVFLTATGAVFHILLTVLLDVEKAKILAQFVAGFVLLSFILGLLINQPEIPFSMNGILTRLSGESSFVLMSLLGANLVPHNFYLHSSVVQWHQGLTSISKNALCHNHFWAILCVFSGLYLVNNMLMTTSANEFYSTGPVLLTFQDALSPMEQVLRGPIALLGFLLILFLANQTIALTWSLGGEVVVRGFLKLDIPGWLHYATIRVIAVLPALYCVWSSGAEGMYQLLIFTQVLVALQLPSFVIPLFRVATSRSIMGVHKISQFMELLALIIFIGMLGLNIVFVVEMIFSNSDWASDLRWNVGSGVSVSYLVLLTAAFTSLCLMLWLAATPLRSASVQLDAQTWNWDMPETLPNPPVVDEESYLTETRCREDASMRVEEPTQAVAKTLEYSDVSLPTFHPDLPESIMEPDPRVNAVRENHSITSASTSESEAVSTVVNEISDSRLEDTKIIKMERNTPIEKTMEVEGDLNAERDDDDGDSWEAEEPSRVVSASVPSSTSDGPASFRSVNGKSDEGGNSFGSLLRIEGLGRAARRQLAAVLDEFWGQLYDFHGQVTQEAKAKKIDLLLGVGVDSRPTSSLQKVDACGKDYSEYLVSVGGRASDTLMNSAPYDFSKQPRMQSNSESSYGLQRSSSSMRANPIQLLDAYVQNSSHNLLDSSERRYSSVRNLHSSEAWDYQPATIHGYQTASYLSRLGKDRNSYNLNGPVDLLSLQSHSIGNTNHRDSLAFALGKKLHSGSGVGQPPGFPNIAVSRNCQLQSERSYNDFCSSGSADNTVNSVNTKKYHSLPDISGYSIPQRAGYASAKNAPWDGSVGYGSFASRTCYDQSLYSDSGLRTGGHLAFDELSSSKVYNEALSSQLSSGFDSGSLWSRQPYEQFGVTEKIHNVAMEGVGNRPNAIIQETTSFVDIEQKLLQSVRLCIVKLLKLEGSDWLFRQNGGADEDLIDCVATREKFVYEIETREMNQVIHMGEAHYFPSDRKFGSSMKNNEAYSSSFLVSSVPNCGEGCIWRSDLIISFGVWCIHRILNLSLVESRPELWGKYTYVLNRLQGIIDPAFLKPRSPLAPCFCLQVPMTHQQKSSPRFSNGMLPPTAKPGRGKCTTVSTLLELIRDVELAIYSRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPVGTNEGTGSRKIPTLALYNQ 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1016 1301 MobiDBLite consensus disorder prediction 1281 1301 - -
Ssu4g1016 1301 PIRSF EIN2 1 1298 IPR017187 GO:0009873
Ssu4g1016 1301 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 14 1184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g1016 1301 Pfam Natural resistance-associated macrophage protein 41 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g1016 1301 MobiDBLite consensus disorder prediction 619 641 - -
Ssu4g1016 1301 MobiDBLite consensus disorder prediction 584 641 - -
Ssu4g1016 1301 MobiDBLite consensus disorder prediction 1279 1301 - -
Ssu4g1016 1301 PRINTS Natural resistance-associated macrophage protein signature 301 320 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g1016 1301 PRINTS Natural resistance-associated macrophage protein signature 329 346 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g1016 1301 PRINTS Natural resistance-associated macrophage protein signature 361 380 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g1016 1301 PRINTS Natural resistance-associated macrophage protein signature 97 123 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g1016 1301 PRINTS Natural resistance-associated macrophage protein signature 199 222 IPR001046 GO:0016020|GO:0030001|GO:0046873
Ssu4g1016 1301 PANTHER ETHYLENE-INSENSITIVE PROTEIN 2 14 1184 - -
Ssu4g1016 1301 MobiDBLite consensus disorder prediction 740 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1016 Ssu-Chr4 16279049 16290935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1016 1 1292 Miscellaneous Gene Families AT5G03280 52.572 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1016 - K14513 gmx:100813034 2161.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1016 4 16279049 16290935 Ssu7g2460 7 47915369 47922551 PCT