Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2450 ATGGAATTTGCAAGGACCATGTTCTGTTCGTCTCCAGCGTTTCCTCCGAGAACTCACCCTTGGAACACTCTTCCTCCGTCTTCTTCTACTTCCGTTTTGATGCTTCGCGAACAACCTTCCCCTACAGTTGTCTCTTGGTCTTCTAATTTTTCAGCACAGAATTTTCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTCTTCTGCACATGTCTAAGGAAGACAAGACATCAcagGCAAGTTTAAATACAAGGCAGATGGATGTGGCCACGGTTCATGAAGAGAATAACACTGGAAATGCTGATCAGGTAGTGCTTGACTTTAGGAAGCACCTGCATCTCTGGCCTCATTTACAGAACTTATTAACTTCCTCACAAACAGGAGATATTGCTGCTTCTTCAACTCTACAGCATGTTTCTTTTGACTCAGAGAGGCGTACAGATGGTGTGCAATGTAATGGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACCTCAAAACAAGCATCCTCAGTAGTTGAAGACTTGAAATCAATTAAACCTGATGATGATTCAATTCCTTTTGGTTTGGCCTCTACTAGTTTGGCTGACCCTTCAATTGGAAGAAATAAAACTGTGAGGTCAACACGGCTTCTAGAGAGACGATCTAAGCAAAGAAAAGTACCTAAGTCAAAAGTTAAAGACGATGAAACCTACCTTGCAAGAATGGATGATGCAAAAGAAAGGCTACGCagagaaaagaagataaatgaAGAATTTGATCAAAATGATCCCCTGAGCTTGTTCATGTGGGGTCCTGAAACAAAACAACTTTTGACTCTTGAACAAGAATCTCAACTGATTTCTCAGATACAGGACTTATTGAGATTGGAAGAATTGAAGACCAGGCTTCAATCTCAATTTGGAAGGGAACCAACCATGGCTGAATGGGCCAAGGGTGCGGGACTTAACTATCGAATGCTGCATGCACAGCTTCGTTGTGGTAACAGAAGCAGAGAAAAGCTGATTCAAGCAAATTTACGCATGGTAGTCTATGTTGCGAAAAGTTATCAGGGCCGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTATGGGTCTTATGAAGAGTGTTGAAAAATTCAATCCCCTAGTTGGTTGTCGATTTGGTAATTATGCATTCTATTGGATAAGACAAGCAATAAGGAAGGCGGTGTTTCGACATTCCAGGACAATCCGTCTACCGGAGAAGGTATACATCCTATTGGGCAAGGTAATGGAGGCAAAGAAATTGTACATTCAAGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGGAGGGTAGGAATTACAGTGGAAAAGATtgacaaattactattttctgCAAGAATTCCAATTTCTATGCAGCAAACTGTGTGGGCTGACCAAGATACAACTTTCCAGGAGATTACTGCTGACCCCTCAATTGAGGCCAATGATGTGAGTGTTGAAAAACAGCTTATGAGGCGGCATGTTGTCAATGTCTTAAGTATCTTACGCCCCAAAGAAAGGAGAATAATCCGGCTAAGATATGGTTTTGAGGATGGTGAACAGAAATCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGAGTTCGTCAATTGGAGATCCGAGCACTATACAAGCTGAAGAAGTGCCTTGTCAAACAAGGACTAGATGCTTATGTAGACTTGCTTTTATAG 1722 0.4071 MEFARTMFCSSPAFPPRTHPWNTLPPSSSTSVLMLREQPSPTVVSWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQASLNTRQMDVATVHEENNTGNADQVVLDFRKHLHLWPHLQNLLTSSQTGDIAASSTLQHVSFDSERRTDGVQCNGVSLAKKALSTSKQASSVVEDLKSIKPDDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVKDDETYLARMDDAKERLRREKKINEEFDQNDPLSLFMWGPETKQLLTLEQESQLISQIQDLLRLEELKTRLQSQFGREPTMAEWAKGAGLNYRMLHAQLRCGNRSREKLIQANLRMVVYVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGCRFGNYAFYWIRQAIRKAVFRHSRTIRLPEKVYILLGKVMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLFSARIPISMQQTVWADQDTTFQEITADPSIEANDVSVEKQLMRRHVVNVLSILRPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2450 573 Coils Coil 238 258 - -
Ssu7g2450 573 PRINTS Major sigma-70 factor signature 545 556 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 PRINTS Major sigma-70 factor signature 361 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 PRINTS Major sigma-70 factor signature 385 393 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 PRINTS Major sigma-70 factor signature 509 521 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 PRINTS Major sigma-70 factor signature 530 545 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 Pfam Sigma-70, region 4 506 558 IPR007630 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 ProSitePatterns Sigma-70 factors family signature 2. 530 556 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 Pfam Sigma-70 region 2 337 406 IPR007627 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 Gene3D - 492 572 IPR036388 -
Ssu7g2450 573 Gene3D RNA Polymerase Primary Sigma Factor 202 409 - -
Ssu7g2450 573 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 573 - -
Ssu7g2450 573 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 470 569 IPR013324 -
Ssu7g2450 573 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 333 560 IPR014284 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 573 - -
Ssu7g2450 573 PIRSF Sigma_factor_SigC 1 573 IPR016262 -
Ssu7g2450 573 ProSitePatterns Sigma-70 factors family signature 1. 361 374 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 Gene3D - 410 487 IPR036388 -
Ssu7g2450 573 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 257 407 IPR013325 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 Pfam Sigma-70 region 3 418 489 IPR007624 GO:0003700|GO:0006352|GO:0006355
Ssu7g2450 573 CDD Sigma70_r4 499 557 - -
Ssu7g2450 573 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 410 483 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2450 Ssu-Chr7 47655575 47660754 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2450 - - gmx:100306289 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2450 7 47655575 47660754 Ssu7g2450 7 47655575 47660754 ECH
Ssu4g1004 4 16062040 16072363 Ssu7g2450 7 47655575 47660754 PCT