LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1004	ATGTTTTGTTCGTCTCCACCGTTTCCTTCATCTTCTTCGCCTTCAATTATGATGCTTCATGAACAAGCTGCTCCTGCAGTTGCTGCCTCCTGGTCTTCCAGTTCTGCAGCTCAGCATTTTCCTACTTCGGTTCTTTTACAAGAGCAGCGTGATGAGTATAGGCCCTTACTTCACGTGTATAATAAGGaggCAACATTAAATACAAGGCAGATGGATATGACCTCAGTTCATGAAAAAGGTAACACGGGCAATGCTGATCAGTTAGTGCATGACTTTGTTCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTCTCTGACAAGGGGAATTGCTGCTTCTTCGATTCTGCAACCTTTTGATATTGATTCAGAGAGGCCTGCAGATGGTCTGCCAGGGGATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCCTCAAAGCAAGCAGCTTCAATAGCTGAAGAAATGACATCAGTTgaagttgatgatgatgatccACTTCTTTTTGGTCTGGTCTCCACAAGTTTGGCTGGCTCTTCACtcaaagagaataaaattgtGAGGTCAACACGGATTATAGAAAGACGGTCTAAACAGAGAAAAGTATCAAAAGTTCTTGATGAAGAGAGTTACCTTGCAAGAAAGTCTGATGTACAGAGAAGGTTACATTTAGAAAAGAAGTTAAAAGAAGGGTTTGATCAAAATGACCCCCTGCGCTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTACAGGATTTATCAAGATTGGAAGAAGTAAAGATTAGGCTTCAATCTCAGTTAAGGCGGGAACCAACTTTGGCTGAATGGGCTGATGTCGCGGGCCTTAGTTGTTATGCCCTGCAGACACAGCTTCATTGCGGTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTGTTACAGGAGGGAAGTACGGGTCTTATGAAGAGCATCGAAAAGTTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATTCAATAAGGAAGGCCTTATTTCTACATTCCAGGACAATTCGTTTGCcgGAGAATTTGTATAGCCTTTTGGGCAAGGTAGCAGAAGCAAAGAAATCATACATTCGGGAAGGAAATCTTCGTCCCACCAAAGAAGAATTAGCAAGTAGGGTAGGAATTACAGTAGAAAAGTTGGAAAATTTGCTATTTGCTTCAAGAATTCCAATTTCAATGCAGCAAACTGTGTGGGCGGACCAAGATACAACTTTCCAGGAAATTACTGCAGACTCTGCAATTGAGATCCCAGATGTGTGTGTTGCAAAACAGCAAATGAGGAGGCATGTGCACAACCTTCTAAATGTCTTAAGCCCAAAAGAAAAGCGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCAAGGAAAAAACGTTGTTGGATATTGGCAAGGTGTTTGGTTTGACCAAGGAGAGGGTCCGACAGTTAGAGAGCAGAGCATTGTCCAAGCTCAAGCAGTGTCTTGTAAGTGAAGGACTTGATGCATATGTAGACTTGCTTGTATAG	1662	0.4194	MFCSSPPFPSSSSPSIMMLHEQAAPAVAASWSSSSAAQHFPTSVLLQEQRDEYRPLLHVYNKEATLNTRQMDMTSVHEKGNTGNADQLVHDFVQQLHLRSHLQNLLTCSLTRGIAASSILQPFDIDSERPADGLPGDAVSLAQQALSASKQAASIAEEMTSVEVDDDDPLLFGLVSTSLAGSSLKENKIVRSTRIIERRSKQRKVSKVLDEESYLARKSDVQRRLHLEKKLKEGFDQNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQSQLRREPTLAEWADVAGLSCYALQTQLHCGNRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLLQEGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHSIRKALFLHSRTIRLPENLYSLLGKVAEAKKSYIREGNLRPTKEELASRVGITVEKLENLLFASRIPISMQQTVWADQDTTFQEITADSAIEIPDVCVAKQQMRRHVHNLLNVLSPKEKRIIRLRFGIEDGKEKTLLDIGKVFGLTKERVRQLESRALSKLKQCLVSEGLDAYVDLLV	553

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g1004	553	Pfam	Sigma-70, region 4	485	538	IPR007630	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	ProSitePatterns	Sigma-70 factors family signature 2.	510	536	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	PRINTS	Major sigma-70 factor signature	525	536	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	PRINTS	Major sigma-70 factor signature	365	373	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	PRINTS	Major sigma-70 factor signature	510	525	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	PRINTS	Major sigma-70 factor signature	489	501	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	PRINTS	Major sigma-70 factor signature	341	354	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	450	549	IPR013324	-
	Ssu4g1004	553	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	390	463	IPR013324	-
	Ssu4g1004	553	SUPERFAMILY	Sigma2 domain of RNA polymerase sigma factors	237	387	IPR013325	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	Pfam	Sigma-70 region 2	317	381	IPR007627	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	Pfam	Sigma-70 region 3	397	469	IPR007624	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	PANTHER	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	8	553	-	-
	Ssu4g1004	553	Gene3D	-	139	386	-	-
	Ssu4g1004	553	PANTHER	RNA POLYMERASE SIGMA FACTOR RPO	8	553	-	-
	Ssu4g1004	553	Gene3D	-	390	466	IPR036388	-
	Ssu4g1004	553	Gene3D	-	467	550	IPR036388	-
	Ssu4g1004	553	TIGRFAM	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	315	540	IPR014284	GO:0003700\|GO:0006352\|GO:0006355
	Ssu4g1004	553	CDD	Sigma70_r4	479	537	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1004	Ssu-Chr4	16062040	16072363	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1004	-		-	gmx:100815699	917.146

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g1004	4	16062040	16072363	Ssu4g1004	4	16062040	16072363	ECH
	Ssu4g1004	4	16062040	16072363	Ssu7g2450	7	47655575	47660754	PCT