Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2418 ATGGCTCTGATAACTCTCTTTGCTGTTTTATTCTTTATGGCCTCCACAAGCAATGCCTACTGGCCACCTTCACCTGGTTACTGGCCAAGTTCCAAATTCAGGTCCGTGAACTTTTACAAAGGGTTTAGAAATCTCTGGGGGCCTCAGCATCAAAGCATAGACCAAAACGCATTAACAATATGGCTTGATAGAACCTCAGGAAGTGGCTTCAAGTCAGTTCGTCCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGCTCCATCCTGGCTATACTGCAGGAGTTATAACAGCTTTCTATCTTTCTAACAATGAGGCACATCCGGGCTTCCATGATGAAGTGGACATTGAGTTTCTTGGGACGACATTTGGGAAGCCTTATACTTTACAGACCAATGTTTATATAAGAGGGAGTGGGGATGGCACAATTATTGGCAGAGAAATGAAGTTCCGCCTTTGGTTTGATCCTACCCAAGATTTTCATCACTATGCTATACTTTGGAGTCCTAAGGAAATAATATTCCTTGTGGATGATGTGCCCATAAGGAGGTACCCAAGGAAGAGCGCTGAAACATTTCCAATGCGGCCAATGTGGCTTTATGGTTCAATATGGGATGCCTCATCGTGGGCAACAGAAGATGGAAAGTACAAAGCTGATTACAGATACCAACCTTTTGTTGCAAGGTTCACCAACTTCAAGGCTGGTGGTTGCACAGCCTATGCCTCTCGTTGGTGCCGTCCAGTCTCAGCCTCACCATATAGGTCTGGTGGGTTGACCAGAAGACAATATTGGGCCATGAAATGGGTGCAAAAATACCACATGGTTTATAACTATTGCCAAGATCCCAAAAGAGACCACAGACTAACACCTGAGTGTTGGGGGTAA 885 0.4486 MALITLFAVLFFMASTSNAYWPPSPGYWPSSKFRSVNFYKGFRNLWGPQHQSIDQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGTIIGREMKFRLWFDPTQDFHHYAILWSPKEIIFLVDDVPIRRYPRKSAETFPMRPMWLYGSIWDASSWATEDGKYKADYRYQPFVARFTNFKAGGCTAYASRWCRPVSASPYRSGGLTRRQYWAMKWVQKYHMVYNYCQDPKRDHRLTPECWG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2418 294 Gene3D - 18 292 - -
Ssu7g2418 294 Pfam Glycosyl hydrolases family 16 40 221 IPR000757 GO:0004553|GO:0005975
Ssu7g2418 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 293 IPR044791 GO:0004553
Ssu7g2418 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 229 IPR000757 GO:0004553|GO:0005975
Ssu7g2418 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 280 IPR013320 -
Ssu7g2418 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 292 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu7g2418 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 293 - -
Ssu7g2418 294 PIRSF EndGlu_transf 2 294 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2418 Ssu-Chr7 47179823 47181457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2418 1 292 Glycoside Hydrolase AT3G44990 65.188 3.13e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2418 K08235 - gmx:100813742 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2418 7 47179823 47181457 Ssu7g2418 7 47179823 47181457 ECH
Ssu4g0988 4 15739962 15741771 Ssu7g2418 7 47179823 47181457 PCT