Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0988 ATGGCTCTCTTTCTCTTTGCTATTTTAATCTTGATGGCCCCTTCAAGCAATGCCTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCCAGATTCGGGTCCATGAGTTTTTACAAAGGGTTTAGAAACCTATGGGGCCTCCAGCACCAAAGTCTAGACCAAAATGCATTAACAATCTGGCTTGATAGAACCTCAGGAAGTGGCTTCAAGTCAGCAAGGGCATTTCGATCCGGGTACTTTGGTGCTTCCATTAAGGTCCAACCTGGCTATACTGCAGGAGTTATAACAGCTTTCTATCTCTCGAACAATGAAGCACATCCTGGTTTCCATGATGAAGTGGACATTGAGTTTCTTGGGACAACATTTGGAAAGCCTTACACTTTGCAGACCAATGTTTACATAAGAGGGAGTGGAGATGGGAAAATTGTAGGCAGAGAGATGAAGTTCCATCTCTGGTTTGATCCTACCCAAGATTTTCATCACTATGCTATACTGTGGAGTCCCAAGGAAATAATATTCCTCGTGGATGATGTGCCCATAAGGAGGTACCCTAGGAAGAGTCCTACAACATTTCCTCTGAGGCCAATGTGGCTATATGGTTCAATATGGGATGCCTCATCATGGGCAACTGAAGATGGAAAGTACAAAGCTGATTACAGATACCAACCTTTTGTGGCAAGGTATACCAATTTCAAGGCTAGTGGTTGCTCAGCGTTTGCCCCTCGTTGGTGCCATCCAGTTTCAGCCTCACCGTATAAATCTGGTGGGTTGACTAGACAACAATATAGGGCTATGAGATGGGTGCAAAGATACCACATGGTTTATAACTATTGTCAAGACCCCAAGAGAGATCACAGACTAACACCTGAGTGTTGGGGTTGA 882 0.4478 MALFLFAILILMAPSSNAYWPPSPGYWPSSRFGSMSFYKGFRNLWGLQHQSLDQNALTIWLDRTSGSGFKSARAFRSGYFGASIKVQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIVGREMKFHLWFDPTQDFHHYAILWSPKEIIFLVDDVPIRRYPRKSPTTFPLRPMWLYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKASGCSAFAPRWCHPVSASPYKSGGLTRQQYRAMRWVQRYHMVYNYCQDPKRDHRLTPECWG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0988 293 Gene3D - 17 291 - -
Ssu4g0988 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu4g0988 293 Pfam Glycosyl hydrolases family 16 39 220 IPR000757 GO:0004553|GO:0005975
Ssu4g0988 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 292 IPR044791 GO:0004553
Ssu4g0988 293 PIRSF EndGlu_transf 3 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu4g0988 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 292 - -
Ssu4g0988 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 279 IPR013320 -
Ssu4g0988 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 228 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0988 Ssu-Chr4 15739962 15741771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0988 1 291 Glycoside Hydrolase AT3G44990 64.261 3.09e-141 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0988 K08235 - gmx:100817157 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0988 4 15739962 15741771 Ssu4g0988 4 15739962 15741771 ECH
Ssu4g0988 4 15739962 15741771 Ssu7g2418 7 47179823 47181457 PCT