Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2381 ATGGGATCACTAGAAAGATCAAGAAAGAAAGTTATGCTATGGAAGAAAGCCATGGTACATTTTTCTCTGTGTTTTGTGATGGGGTTCTTCACAGGCTTCGCTCCTACAGGTAAATCTATATCTCACAGCCATGTTGCTGCTTCAACTAGATCAGAATTTGCACCACAACCTATTGAAGTGTCACATAAGACAACAAATGTCAATAGAAGTTGGATAGCTCCAACACCAGAGACCTTGCCCACAAGGTCTATATTCCACAAGCAAACAGCAAAGTTGCATGTAAAACCAGAACCCCAGTTGAAGCCTAGAAGGCTTATAATCATTGTAACTCCAACAAGCACAAAACTTGCTTTCCAAGCAGTGGTTTTGACAAGGTTGGCAAATACTATAAAGCTGGTTCCTCAACCATTGCTGTGGATTGTTGTGGAAGGGCAAACAGATTCCACAGAACTTTCAAAGACACTTAGGAAGACCAGCATCATGTATAGGCATTTGGTTTCCAAGGAAAACTTCACGGACTTGGAAGCTGAACTGAATCACCAGAGAAATCTTGCACTCAAGCACATTGTGCATCACAGGCTAAGTGGGATCGTACACTTTGCTGAGCTTTCCAATGTTTATGATCTCGAATTCTTCCAACAACTAAGATATATTGAGGTATTTGGAACATGGCCAACGGCATTGTTAGCAGCAAACAGGAAGAAAGTGATAATAGAAGGACCTGTGTGCGATTCTTCACGAGTCATAGGCTGGCATTTAAGGAATATGAACAATGAAACCGATACAAATACTCCTCCCATTCATATTTCAAGTTTTGCATTCAATAGCTCCATCCTCTGGGACCCTCAGAGATGGGGTCGAACTTCCACTCTTCAAGACACCTCTCAGAATTCCATCAAATTCGTGAAGCAAGCAGTTCTAGAGGACGAAGCAAAGTTGAAGGGAATTCCCCCAGAGGACTGTTCCAGAATCTTGCTTTGGCGTTTCAGTTTCATGCCCACACCACTTCGAATCATAAATCTTTGA 1026 0.4211 MGSLERSRKKVMLWKKAMVHFSLCFVMGFFTGFAPTGKSISHSHVAASTRSEFAPQPIEVSHKTTNVNRSWIAPTPETLPTRSIFHKQTAKLHVKPEPQLKPRRLIIIVTPTSTKLAFQAVVLTRLANTIKLVPQPLLWIVVEGQTDSTELSKTLRKTSIMYRHLVSKENFTDLEAELNHQRNLALKHIVHHRLSGIVHFAELSNVYDLEFFQQLRYIEVFGTWPTALLAANRKKVIIEGPVCDSSRVIGWHLRNMNNETDTNTPPIHISSFAFNSSILWDPQRWGRTSTLQDTSQNSIKFVKQAVLEDEAKLKGIPPEDCSRILLWRFSFMPTPLRIINL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2381 341 CDD GlcAT-I 104 333 IPR005027 GO:0015018|GO:0016020
Ssu7g2381 341 Pfam Glycosyltransferase family 43 126 329 IPR005027 GO:0015018|GO:0016020
Ssu7g2381 341 SUPERFAMILY Nucleotide-diphospho-sugar transferases 104 333 IPR029044 -
Ssu7g2381 341 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 104 337 IPR029044 -
Ssu7g2381 341 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED 1 331 - -
Ssu7g2381 341 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 331 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2381 Ssu-Chr7 46538854 46541248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2381 1 338 Glycosyltransferase AT2G37090 58.427 2.76e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2381 K20869 - gmx:100782450 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2381 7 46538854 46541248 Ssu7g2381 7 46538854 46541248 ECH
Ssu4g1046 4 16734222 16736404 Ssu7g2381 7 46538854 46541248 PCT