Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1046 ATGGGTTCACTAGAAAGATCAAAGAAGAAAGTTCTTTTATGGAAGAAGGCCATGCTCCATTTTTCCCTATGTTTTGTGATGGGGTTTTTCACAGGCTTAGCTCCAACAGGTAAATCTTCTCTCTTTTCCACCAAAGTTGCTGCCTCAAATAGGACAGAATTTGCACCACAACCTAGTGAAATGTCACATCTCACAACAAATGTCAATAGAAGTTGGATAGCTCCAACGCCGGTGGCCATGCCTATGAAGCCTAGAATCCttgaaaacaaagaaacaacAACTACAAAGTTGCATGTAAAACCACAACCCCAGTTGAAGCCTAGAAGACTCATAATCATTGTGACTCCAACAAGCACAAAACTTCCCTATCAAGCAGTGTTTTTAAGAAGGTTGGCAAATACTATAAAGCTAGTTCCTCAACCATTGCTGTGGGTTGTTGTGGAAGCTAAAACGAATTCCACAGAACTGCCAGAGATTCTAAGGAAAACTGGCATCATGTATAGGCATGTGGTTTTCAAGGAAAACTTCACGGAATTAGAAGCTGAACTGAATCACCAGAGAAACCTTGCGCTTAAGCACATTGAGCACCACAGGCTCAACGGCATTGTACACTTTGCTGGCCTCTCCAATGTTTATGATCTCCAATTCTTCCATCAGCTTAGAGATATTGAGGTCTTTGGAACATGGCCAACCGCATTGTTAGCTGCAAAcaggaaaaaagtgaaaatcgaAGGACCTGTATGCGATTCGTCACAAGTCATTGGTTGGCATCTAAGGAAAATGAACAATGAAACTGATACAATCACTCCCCCCATTCATATTTCAAGTTTTGCCTTTAATAGCTCCATCCTTTGGGACCCTGAGAGATGGGGTCGCACTTCCTCTGTTCAAGACACTTCTCAGAATTCAATCAAGTTCGTGAAGCAAGTAGTTCTAGAAGATGAGGCTAAATTAAAGGGAATTCCACCAGAGGACTGCTCCAAAATCTTGCTCTGGCGTTTCAATTTTCGTGCCCGAACCACCTCAAATCACTAA 1035 0.4087 MGSLERSKKKVLLWKKAMLHFSLCFVMGFFTGLAPTGKSSLFSTKVAASNRTEFAPQPSEMSHLTTNVNRSWIAPTPVAMPMKPRILENKETTTTKLHVKPQPQLKPRRLIIIVTPTSTKLPYQAVFLRRLANTIKLVPQPLLWVVVEAKTNSTELPEILRKTGIMYRHVVFKENFTELEAELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFHQLRDIEVFGTWPTALLAANRKKVKIEGPVCDSSQVIGWHLRKMNNETDTITPPIHISSFAFNSSILWDPERWGRTSSVQDTSQNSIKFVKQVVLEDEAKLKGIPPEDCSKILLWRFNFRARTTSNH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1046 344 CDD GlcAT-I 109 338 IPR005027 GO:0015018|GO:0016020
Ssu4g1046 344 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 108 344 IPR029044 -
Ssu4g1046 344 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 342 IPR005027 GO:0015018|GO:0016020
Ssu4g1046 344 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9-RELATED 1 342 - -
Ssu4g1046 344 SUPERFAMILY Nucleotide-diphospho-sugar transferases 109 339 IPR029044 -
Ssu4g1046 344 Pfam Glycosyltransferase family 43 131 335 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1046 Ssu-Chr4 16734222 16736404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1046 1 340 Glycosyltransferase AT2G37090 61.782 1.56e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1046 K20869 - gmx:100785607 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1046 4 16734222 16736404 Ssu4g1046 4 16734222 16736404 ECH
Ssu4g1046 4 16734222 16736404 Ssu7g2381 7 46538854 46541248 PCT