Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2320 ATGCGCTTAGCCTTTTTTCTaagctttttctttcttttttgCTGGAGAAGAACAATGAGAACAGAGTTGAAGAAGAAGATATCCAAGTCTTCGTGGCCAAAATTTAACGTAAGGAAGTGGCTCAATATAAGGAGCAGCGATGACAAGTTTCACTCAGATTACTCTCTAACAGaggGGTGGCTGATGGACTCCACAAATGAATTGAAACATTCGGCAGCAGGGAAGGAGGCGCCACCTGTCAGTGACATTGACACGCTCAGCCTTAGGATGTTCGTGGGGACGTGGAATGTCGGAGGGAAGTCGCCGAACGAGGGATTGAACTTGAGGGATTGGTTGATGTTGCCTTCACCAGCTGATATCTATGTCATTGgGTTCCAAGAAATTATACCTCTAAACGCAGGGAACGTGCTTGGGCCAGAGGACAGTGGCCCAGCAGCGAAGTGGCTGACCCTTCTTCGTCATGCCTTGAACTCTAAGACAAGCTCCAGCGGAGAAAGTTCTCCTACATCGTCTTTTAATAGTACAAGCCCAAGTGAACAACGTTATTATTGCCTAGCAGCAAGCAAGCAAATGGTGGGTATCTTCTTGTGCGTGTGGGTACGTGCTGATCTTTACAAGCATGTTAGCAATTTAAAGGTGTCTTGCGTTGGTAGAGGCATCATGGGCTATCTAGGAAATAAGGGTTCTATATCGATTAGCATGACTTTGTACGACACGACGTTTTGCTTCGTTTGTACCCACTTGGCCTCCGGAGAGAGAGATGGTGATGAGGTGCGAAGAAATTTGGACGTCTCAGAGATcttaaagaaaactaaattttcTCATTCATTCAAAGCTCTTGGTCAACCACTCCCTCCCGAAAGCATATTAGAGCATGACAAGATTATTTGGCTTGGGGACTTGAATTATCGGCTCGCTGCTGGTTACGATGATACACTTGAGCTACTGAAGAAGAATGATTGGCAGGCACTATTAGAGAAAGAtcagCTAAGGATAGAGCAGAAAGCTGGTCGAGTATTCAAAGAGTGGAAGGAAGGGAAGATATATTTTGCTCCTACTTACAAATACTTATTCGATTCTGACCAGTATGTTGCTCAAACCAACAAGTCCAAGGAAAAACGACGGACTCCGGCTTGGTGTGATCGAATTCTGTGGAAAGGAGAAGGCGTGGAGCAGTTATGGTACGTGCGAGGAGAGTCCAAATTCTCAGACCACAGGCCCGTGTATTCACTATTCTCGGTTCACGTGGACTTGACATGTAAGAACTCTATTGCCGCATCAGATAGCTCAATAATCTCAAGGTCGTGTCCCTCTAGACCCTTGACAAACGCTGCCTTGTCATCGTCTTGCTTTGCTAAAGTCCAGGCAGAGGAGCAGCTCTTGTTACTAACCAGGGCACATAGACACCGCACCTGCAGGGTTCTGACTTAG 1431 0.45 MRLAFFLSFFFLFCWRRTMRTELKKKISKSSWPKFNVRKWLNIRSSDDKFHSDYSLTEGWLMDSTNELKHSAAGKEAPPVSDIDTLSLRMFVGTWNVGGKSPNEGLNLRDWLMLPSPADIYVIGFQEIIPLNAGNVLGPEDSGPAAKWLTLLRHALNSKTSSSGESSPTSSFNSTSPSEQRYYCLAASKQMVGIFLCVWVRADLYKHVSNLKVSCVGRGIMGYLGNKGSISISMTLYDTTFCFVCTHLASGERDGDEVRRNLDVSEILKKTKFSHSFKALGQPLPPESILEHDKIIWLGDLNYRLAAGYDDTLELLKKNDWQALLEKDQLRIEQKAGRVFKEWKEGKIYFAPTYKYLFDSDQYVAQTNKSKEKRRTPAWCDRILWKGEGVEQLWYVRGESKFSDHRPVYSLFSVHVDLTCKNSIAASDSSIISRSCPSRPLTNAALSSSCFAKVQAEEQLLLLTRAHRHRTCRVLT 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2320 476 Pfam Endonuclease/Exonuclease/phosphatase family 93 405 IPR005135 GO:0003824
Ssu7g2320 476 Gene3D Endonuclease/exonuclease/phosphatase 76 437 IPR036691 -
Ssu7g2320 476 SUPERFAMILY DNase I-like 86 417 IPR036691 -
Ssu7g2320 476 SMART i5p_5 86 423 IPR000300 GO:0016791|GO:0046856
Ssu7g2320 476 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 8 32 461 - -
Ssu7g2320 476 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 32 461 IPR045849 GO:0004445|GO:0046855
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2320 Ssu-Chr7 45493873 45499579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2320 52 416 Acyl Lipid Metabolism Gene Families AT1G65580 30.861 2.13e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2320 - - gmx:100792720 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1108 4 17649075 17655096 Ssu7g2320 7 45493873 45499579 PCT