Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1108 ATGAGAACAGAGTCGAAGAAGATATCCAAGtCTTCGTGGCCCAAATTGGCCATGAGGAAGTGGCTCAATATAAAGAGCAGTGCAGAGAAGTTTCACTCAGAATATGATGCAACAGCAACTGCGAGGGAGAGGAGAAGGAGCTGTTCGGACCAGGATCGTTACGTCGTCGTACCGGATGATTTCTCAGAGGGGTGGGTGATGGATTCTACTAGCGGTATGAAACGTTCGGTACTTGGGAAGAAATCAACTCCTGCCACTGGGACTCTGGACCTTGGGATGTTCGTGGGGACGTGGAATGTCGGAGGGAAGTCACCGAACGAAGGCTTGAATTTGAGGAATTGGCTGACGTGTCCTTCATCGGCTGACATCTATGTTATCGGGTTCCAAGAAATTGTCCCGCTAAATGCGGGGAACGTGCTTGGGCCGGAGGACAGTGGCCCAGCAGCGAAGTGGTTGGCCCTTATTCGTGAAGCCTTGAACACCAAGAAGTGCGACCATGAAATGTCGCAGTATTACGACGACGACGATACCACTAATAACAGCGATGGTGAACATGATCGAGAAGGAAGCCTGAAGTGCAGGGACAGTTTCTCGGAGTTCCTGTCTTTAGAGGAGTTGGATAATGGAGAAAGTTCCCCCACGAGTGCGCGACACTATTGCCTAGCCGCAAGCAAGCAAATGGTTGGTATCTTCTTGTCCGTGTGGGTACGAGCGGATCTTTGCAACCATGTTAGCAATTTGAAAGTGTCCTGCGTTGGCAGAGGCATCATGGGCTATCTTGGAAATAAGGGTTCAACATCAATTAGCATGACATTGAACAACACCACGTTCTGCTTCGTTTGCACCCACTTGGCTTCTGGGGAGAAATTTGGTGACGAGTTGCGAAGAAACTTGGACGTCTCGGAAATTctaaagaaaactaaattttgtCACTCGTTTAAATCTCTTGCTCATCCACTCCCTCCTGAAAGCATACTGGAACACGATAATATTATTTGGTTTGGCGATTTGAATTATCGGTTAGCTGCTGGCTACGATGACACACATGAACAATTAAAGAAGAATAATTGGCAGGCATTACTAGAGAAGGATCAGCTAAGGATAGAGCAGAGTGCTGGTCGAGTATTTAAAGGTTGGAATGAAGGGAACATATACTTTGCTCCTACTTACAAATACTTGACCAATTCTGACCACTACGTTGCCCAATCCACCAAATCGAAGGAAAAACGACGGACTCCTGCTTGGTGCGATCGAATTCTGTGGAAAGGGGAAGGCCTCAATCAGATGTGGTATGTTCGAGGAGAGTCCAAATTCTCAGACCACAGGCCCGTGTATTCACTATTCTCGGTTCAAGTGGACTTGACAAGCAAGAATCTCGCTCCCTCTGCTGCCACTATGCCCCGGTCCTGTCCGTTAAAACCGTTGACAAATTCTGCGTTGTCAACGACTTGTTGCGCTGCTAAAGTCCAGGCAGAAGAGCAACTCTTGCTGCTAACGAGGGCACAAAGTTGCATCGACACAGTACCCAGGTTTTGA 1536 0.4753 MRTESKKISKSSWPKLAMRKWLNIKSSAEKFHSEYDATATARERRRSCSDQDRYVVVPDDFSEGWVMDSTSGMKRSVLGKKSTPATGTLDLGMFVGTWNVGGKSPNEGLNLRNWLTCPSSADIYVIGFQEIVPLNAGNVLGPEDSGPAAKWLALIREALNTKKCDHEMSQYYDDDDTTNNSDGEHDREGSLKCRDSFSEFLSLEELDNGESSPTSARHYCLAASKQMVGIFLSVWVRADLCNHVSNLKVSCVGRGIMGYLGNKGSTSISMTLNNTTFCFVCTHLASGEKFGDELRRNLDVSEILKKTKFCHSFKSLAHPLPPESILEHDNIIWFGDLNYRLAAGYDDTHEQLKKNNWQALLEKDQLRIEQSAGRVFKGWNEGNIYFAPTYKYLTNSDHYVAQSTKSKEKRRTPAWCDRILWKGEGLNQMWYVRGESKFSDHRPVYSLFSVQVDLTSKNLAPSAATMPRSCPLKPLTNSALSTTCCAAKVQAEEQLLLLTRAQSCIDTVPRF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1108 511 MobiDBLite consensus disorder prediction 171 190 - -
Ssu4g1108 511 Gene3D Endonuclease/exonuclease/phosphatase 69 468 IPR036691 -
Ssu4g1108 511 Coils Coil 349 369 - -
Ssu4g1108 511 SUPERFAMILY DNase I-like 74 454 IPR036691 -
Ssu4g1108 511 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 8 9 500 - -
Ssu4g1108 511 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 9 500 IPR045849 GO:0004445|GO:0046855
Ssu4g1108 511 Pfam Endonuclease/Exonuclease/phosphatase family 96 441 IPR005135 GO:0003824
Ssu4g1108 511 SMART i5p_5 89 456 IPR000300 GO:0016791|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1108 Ssu-Chr4 17649075 17655096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1108 72 459 Acyl Lipid Metabolism Gene Families AT2G43900 26.512 1.50e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1108 - - gmx:100800223 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1108 4 17649075 17655096 Ssu7g2320 7 45493873 45499579 PCT