Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2306 ATGGTGGGTATCTTTTCGTTGGTTACAGGGAGGCCGGGACCAAGTGGTTTCGGATCTGCCTCAACTGCTGAACAGGTTACTGAAGGAATTGATGCCAGCAACCTCACGGCAATTATCACAGGAGGAGCGAGTGGCATTGGGTTGGAGACAGCACGTGTCCTGGCTCTTCGAAAGGCCCATGTCATTATTGCTGCGAGGAACATGGAGTCTGCGAAGGATGCTAAACAACTCATACTGCAGGAAAACGAGTCAGCTCGTGTGGACATAATGAAGCTCGACCTTTGCTCAGTGAACTCTGTCAGATCATTTGTGGACAACTTCCTCGCTCTTGGTCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTATCAGCGTACAGAAGATGGGATCGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTCTTGGCGAACCTTCTTCTTGACAAGATGAAACAAACCGCAAAAGCCACTGGAATTGAGGGCAGGATCATAAATCTCTCATCAATTGCTCACGTCTACGCTTACGAAGAGGGGATTCGATTTGACAACATCAATGATGAAGATGGATACTCTGACAAGAGGGCCTATGGGCAGTCCAAGTTAGCCAACATATTGCACGCAAACGAGCTTTCTCGTCGCTTACAGGAAGAGGGTGTTAACATCACAGCCAACTCAGTCCACCCGGGGGTGATAATGACTCCTCTCATGAGACACTCGTCTTTACTTATGAACTTTCTGAAGATGTTCACCTTCTTCATATGGAAGAACGTACCACAGGGAGCAGCCACAACGTGCTATGTTGCTCTACACCCAAACTTGAAAGGGGTAACCGGGAAGTACTTTCTGGATTGTAATGAGTTTCAACCAAGTGCATTTGCGTCAAACGAACTCTTAGGAAGGAAATTGTGGGATTTTAGCAACAAGTTGATCAATTCACTTTCGAAAGCTTGA 972 0.463 MVGIFSLVTGRPGPSGFGSASTAEQVTEGIDASNLTAIITGGASGIGLETARVLALRKAHVIIAARNMESAKDAKQLILQENESARVDIMKLDLCSVNSVRSFVDNFLALGLPLNILINNAGVMFCPYQRTEDGIEMQFATNHLGHFLLANLLLDKMKQTAKATGIEGRIINLSSIAHVYAYEEGIRFDNINDEDGYSDKRAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFFIWKNVPQGAATTCYVALHPNLKGVTGKYFLDCNEFQPSAFASNELLGRKLWDFSNKLINSLSKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2306 323 Gene3D - 26 320 - -
Ssu7g2306 323 Pfam short chain dehydrogenase 36 184 IPR002347 -
Ssu7g2306 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Ssu7g2306 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Ssu7g2306 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Ssu7g2306 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Ssu7g2306 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Ssu7g2306 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Ssu7g2306 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Ssu7g2306 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Ssu7g2306 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Ssu7g2306 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Ssu7g2306 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2306 Ssu-Chr7 45298476 45303745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2306 35 244 Miscellaneous Gene Families AT2G29340 29.680 1.64e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2306 K11153 - gmx:100807056 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2306 7 45298476 45303745 Ssu7g2306 7 45298476 45303745 ECH
Ssu4g1128 4 17913647 17916938 Ssu7g2306 7 45298476 45303745 PCT