Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1128 ATGGTGGGTGTTATTTCGTTGGTAACAGGAAGGCCTGGTGCAAGCGGCTTTGGATCAGCTTCCACTGCAGAACAGGTTACTGAAGGAATTGATGCCAGCAACCTCATTGCAATTATCACAGGAGGAGCAAGTGGTATAGGCTTGGAGACAGCACGAGTGTTGGCTCTTCGGAAGGTCCATGTCATCATTGCAGTACGAAACATGGTGTCTGCAAAGGAAGCTAAACAACATATACTAGAGGAAAATGAGTCTGCAAAAGTGGACATAATGAAGCTCGACCTATGCTCAGTGAATTCTGTTAGATCATTTGTGGACAACTTCTTAGCACTTGATCTTCCTCTCAACATCCTAAtAAACAATGCTGGAGTAATGTTCTGCCCCTTCAAGCTTTCAGAGGATGGGATTGAGATGCAGTTTGCAACAAACCATCTTGgCCATTTCCTCTTGACAAACCTGCTTCTTGACAAAATGAAACAAACTGCAAAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACTTACAGAAAGGGGattagatttaaaaagatcAATGAGCGAAAAGGTTATGGTAACAAGAAGGCGTATGGACAGTCCAAGTTAGCTAACATATTACATGCAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGTGTGAACATCACAGCCAACTCGGCCCACCCGGGAGTGATAATGACTCCTCTTATGAGACATTCTTCTTACCTTATGCACTTCCTGAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTCACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTGCATTTGCCAAAAACAAACAGCTAGGAATGAAACTCTGGGATTTCAGTAACGAGTTGATCAAGTCAATTTCAAAAGCTTGA 972 0.4342 MVGVISLVTGRPGASGFGSASTAEQVTEGIDASNLIAIITGGASGIGLETARVLALRKVHVIIAVRNMVSAKEAKQHILEENESAKVDIMKLDLCSVNSVRSFVDNFLALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKATGIEGRIINLSSIAHNYTYRKGIRFKKINERKGYGNKKAYGQSKLANILHANELSRRLQEEGVNITANSAHPGVIMTPLMRHSSYLMHFLKVFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNQCKPSAFAKNKQLGMKLWDFSNELIKSISKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1128 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Ssu4g1128 323 Gene3D - 7 320 - -
Ssu4g1128 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Ssu4g1128 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Ssu4g1128 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Ssu4g1128 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Ssu4g1128 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Ssu4g1128 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 296 IPR036291 -
Ssu4g1128 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Ssu4g1128 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Ssu4g1128 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Ssu4g1128 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Ssu4g1128 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1128 Ssu-Chr4 17913647 17916938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1128 24 296 Acyl Lipid Metabolism Gene Families AT1G63380 23.103 2.68e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1128 K11153 - gmx:100801849 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1128 4 17913647 17916938 Ssu4g1128 4 17913647 17916938 ECH
Ssu4g1128 4 17913647 17916938 Ssu7g2306 7 45298476 45303745 PCT