Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2298 ATGGGTCAGGGAACTCCGGGCGGCATGAACCGGCAGGGCGATCGGAAGGCGGACGGCGGCgacaagaaggagaagaagttCGAGCCGGCGGCGCCACCGGCGCGCGTTGGGCGGAAACAGCGGAAGCAGAAGGGTCCGGAGGCGGCGGCGCGTTTGCCGACGGTGACTCCGGTGACGAAGTGCAAGCTGAGGCTGCTGAAGCTGGAGCGAATCAAGGACTACCTGTTGATGGAGGAGGAGTTCGTGGCGAATCAGGAGCGCCTCAAGCCGCAGGAGGAGAAGGCCGAGGAAGACAGATCCAAGGTCGACGATCTCCGAGGCTCTCCCATGAGCGTCGGTAACCTCGAAGAGCTCATCGACGAGAGCCACGCTATCGTTTCCTCCTCCGTCGGCCCCGAGTATTACGTCGGAATCTTGTCTTTCGTCGATAAGGATCAGTTAGAGCCTGGTTGTGCTATTTTGATGCATAATAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTCATGAAGGTTGAGAAGGCTCCTCTGGAATCTTATGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTACCCCTGACTCATCCTGAACTATATGAAGACATAGGTATCAAGCCTCCTAAAGGGGTCATTTTATACGGAGAACCTGGAACTGGGAAGACCTTGCTTGCAAAGGCCGTGGCAAACTCAACATCGGCAACATTCTTACGTGTTGTTGGTAGTGAATTGATACAAAAATACTTGGGAGATGGCCCAAAACTTGTGAGGGAACTTTTCAGAGTTGCTGATGATCTTTCTCCTTCTATTGTATTCATTGATGAAATTGATGCAGTTGGTACAAAGAGGTATGATGCCCACTCAGGTGGAGAACGTGAAATTCAAAGGACCATGTTAGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTAAAAGTGATTCTGGCAACCAACAGAATTGAGAGTCTTGATCCAGCTTTGCTACGACCTGGTCGAATTGACAGGAAGATAGAATTTCCTCTTCCTGATATCAAAACGAGGAGACGCATTTTCCAGATACACACGTCAAGGATGACATTAGCTGATGACGTCAACTTGGAAGAATTTGTTATGACTAAAGATGAATTCTCTGGAGCTGATATAAAGGCAATATGTACTGAAGCTGGTTTACTTGCTCTACGAGAACGCCGAATGAAGGTGACTCATGCCGACTTTAAGAAGGCCAAggataaagtgatgtttaagaagaaagaagggGTGCCCGAAGGGCTGTATATGTGA 1332 0.4722 MGQGTPGGMNRQGDRKADGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPVTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2298 443 MobiDBLite consensus disorder prediction 87 105 - -
Ssu7g2298 443 Gene3D - 178 358 IPR027417 -
Ssu7g2298 443 Gene3D - 110 177 IPR012340 -
Ssu7g2298 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 436 IPR027417 -
Ssu7g2298 443 MobiDBLite consensus disorder prediction 1 52 - -
Ssu7g2298 443 MobiDBLite consensus disorder prediction 87 107 - -
Ssu7g2298 443 Pfam Proteasomal ATPase OB C-terminal domain 112 165 IPR032501 -
Ssu7g2298 443 MobiDBLite consensus disorder prediction 14 32 - -
Ssu7g2298 443 CDD AAA 191 358 - -
Ssu7g2298 443 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 78 430 IPR005937 GO:0005737|GO:0030163|GO:0036402
Ssu7g2298 443 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 16 443 - -
Ssu7g2298 443 Gene3D - 363 437 - -
Ssu7g2298 443 Pfam AAA+ lid domain 380 424 IPR041569 -
Ssu7g2298 443 SMART AAA_5 221 360 IPR003593 -
Ssu7g2298 443 Pfam ATPase family associated with various cellular activities (AAA) 225 358 IPR003959 GO:0005524|GO:0016887
Ssu7g2298 443 PANTHER BNAA08G13550D PROTEIN 16 443 - -
Ssu7g2298 443 ProSitePatterns AAA-protein family signature. 328 346 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2298 Ssu-Chr7 45066649 45072484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2298 186 428 Miscellaneous Gene Families AT3G47060 44.355 3.14e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2298 K03062 - gmx:100783293 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2298 7 45066649 45072484 Ssu7g2298 7 45066649 45072484 ECH
Ssu4g1140 4 18101175 18110471 Ssu7g2298 7 45066649 45072484 PCT