Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1140 ATGGGTCAGGGAACACCGGGCGGTTTGAACCGGCAGGGTCTTCCGGGGGACCGGAAGTCGGACGGCGGcgagaagaaggagaaaaagttCGAGCCGGCGGCGCCACCGGCTCGCGTGGGGCGTAAGCAGCGGAAGCAGAAGGGTCCGGAGGCGGCGGCGCGGTTGCCGACGGTGACGCCGCTGTCGAAGTGCAAGCTGCGGCTGCTGAAGCTGGAGCGCATAAAGGACTACCTGTTGATGGAGGAGGAGTTCGTGGCGAACCAGGAGCGGCTGAAGCCGCAGGAGGAGAAGGCCGAGGAGGACAGATCCAAGGTCGACGACCTCAGGGGTTCCCCTATGAGCGTCGGTAACCTCGAAGAACTCATCGACGAGAATCATGCCATTGTTTCGTCCTCGGTGGGGCCCGAGTACTATGTCGGCATCTTGTCTTTCGTCGATAAGGATCAGCTCGAACCTGGATGCGCTATTTTGATGCATAACAAGGTTCTCTCTGTTGTTGGGCTTCTTCAAGATGAAGTGGATCCAATGGTATCTGTTATGAAGGTCGAAAAAGCTCCTTTGGAATCATACGCTGACATTGGTGGTTTAGATGCTCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCCCTGACACATCCTGAACTGTATGAAGACATTGGTATCAAGCCTCCGAAGGGAGTCATTTTATATGGAGAACCTGGAACTGGGAAGACGTTGCTTGCAAAGGCTGTGGCAAACTCAACATCAGCAACCTTTTTACGTGTTGTTGGTAGtgaattaatacaaaaatacttGGGAGATGGTCCAAAACTTGTAAGGGAACTTTTTCGAGTTGCTGATGATCTTTCCCCATCTATTGTCTTCATTGATGAAATTGATGCTGTTGGTACAAAGAGGTATGATGCCCACTCAGGTGGGGAACGTGAAATTCAGAGGACTATGTTGGAGTTGCTGAACCAGTTAGATGGTTTCGATTCAAGAGGAGATGTTAAAGTGATTCTTGCAACCAATAGAATTGAAAGCCTTGATCCAGCCCTGCTGCGACCTGGTCGAATAGACAGGAAGATTGAATTTCCTCTCCCTGATATCAAAACAAGAAGACGCATTTTCCAAATACACACATCAAGGATGACATTAGCTGATGATGTCAACTTAGAAGAATTTGTTATGACTAAGGATGAGTTTTCTGGAGCTGATATAAAAGCAATATGTACTGAGGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGGTGACGCATGCCGACTTTAAGAAGGCAAAGGATAAAGTTATGtttaagaagaaagaagggGTGCCAGAAGGACTGTATATGTGA 1341 0.472 MGQGTPGGLNRQGLPGDRKSDGGEKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1140 446 Pfam AAA+ lid domain 383 427 IPR041569 -
Ssu4g1140 446 Gene3D - 113 180 IPR012340 -
Ssu4g1140 446 Pfam ATPase family associated with various cellular activities (AAA) 228 361 IPR003959 GO:0005524|GO:0016887
Ssu4g1140 446 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Ssu4g1140 446 PANTHER BNAA08G13550D PROTEIN 19 446 - -
Ssu4g1140 446 MobiDBLite consensus disorder prediction 90 110 - -
Ssu4g1140 446 Pfam Proteasomal ATPase OB C-terminal domain 115 168 IPR032501 -
Ssu4g1140 446 MobiDBLite consensus disorder prediction 90 108 - -
Ssu4g1140 446 MobiDBLite consensus disorder prediction 17 35 - -
Ssu4g1140 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 439 IPR027417 -
Ssu4g1140 446 CDD AAA 194 361 - -
Ssu4g1140 446 Gene3D - 366 440 - -
Ssu4g1140 446 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 19 446 - -
Ssu4g1140 446 MobiDBLite consensus disorder prediction 1 54 - -
Ssu4g1140 446 Gene3D - 181 361 IPR027417 -
Ssu4g1140 446 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 81 433 IPR005937 GO:0005737|GO:0030163|GO:0036402
Ssu4g1140 446 SMART AAA_5 224 363 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1140 Ssu-Chr4 18101175 18110471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1140 189 431 Miscellaneous Gene Families AT3G47060 44.355 3.93e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1140 K03062 - tcc:18611870 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1140 4 18101175 18110471 Ssu4g1140 4 18101175 18110471 ECH
Ssu4g1140 4 18101175 18110471 Ssu7g2298 7 45066649 45072484 PCT