Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2294 ATGGAGGAAGCGCTTGAGCTCGCGCGCGCGAAAGACGCGAAGGAGAGGATGGCGGGCGTGGAGCGCCTCCACGAAGTGCTGGAAGCTTCTAGAAGGAGCCTCAGTGCCGGCGAAGTCACGTCGCTCGTCGATTGCTGCTTGGATCTCTTGAAGGACAGCAGCTTCAAGGTCTCGCAGGGCGCGCTTCAGGCGCTCGACTCCGCCGCCGTTCGCGCCGGCGACCACTTCAAGCTTCACTTCAACGCGCTCGTTCCCGCTGTCGTGGAGCGCTTAGGCGACGCCAAACAGCCTGTTCGCGACGCCGCCAGAAGGCTCTTGCTCACTCTCATGGAGgTTTCGTCTCCTACAATACTTGTTGAAAGAGCAGGGTCCTTTGCTTGGACATGCAAAAGCTGGAGAGTCAGAGAGGAATTTGCGCGAACTGTCACATCTGCAATTGGTCTATTTTCATCTACCGAGCTTCCCCTTCAACGTGCTATTCTTCCTCCTATTTTGCAGTTGCTGAATGATCTGAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGgaaATGTATACACAAGCTGGGTCCCAATTTCGTGATGAACTTCAGCGCCACAATCTTCCTTCATCTTTGGTGAAAGCTATTAATGCCAGGCTAGAGGGAATTCAACCAAAAGTTCACTCTTCAGATGGTATTTCTAGTGGTTATATTGCTGGGGAAATTAAGCCTGTGGGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCATCAAGGGAGAGCTCTCTTTTTGGAGcAGGAGAAGGTGATGTCACAGAGAAAGTCATAGACCCCATCAAGGTGTATTCAGAGAAGGAGTTAATCAGACAAATTGATAAGATTGCTTCTACCCTTGTACCAGAAAAGGACTGGTCAATTCGTATTGCTGCCATGCAAAGAATTGAAGGTCTTGTTTTGGGAGGTGCTGCTGATTATCCATGTTTCTGTGGACTCCTGAAGCAGCTTGTTGGACCTTTAAGTACACAATTGTCAGATCGAAGGTCTAGCATTGTGAAGCAGGCTTGCCATCTATTATGCTTTTTGTCAAAGGACCTCTTGGGTGATTTTGAAGCATGTGCAGAATTGTTCATACCAGTCCTTTTGAAGCTGGTTGTGATTACTGTGCTTGTAATTGCGGAATCTGCAGATAACTGCATAAAAACgATGTTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCTCGGATAGCTGATTGTGCCAAAAATGATCGTAATGCAGTACTTCGTGCAAGGTGTTGTGATTATGCTCTTTTGATACTAGAACATTGGCCTGATGCAGCAGAAATAAACCGATCGGCTGATTTATATGAGGATATGATAAGGTGTTGTGTTTCAGACGCAATGAGTGAGGTGCGGTCGACTGCAAGGATGTGTTACAGAATGTTTGCAAAGACTTGGCCAGAACGTTCCCGTCGCCTGTTTTCATCCTTTGACCCTGCTATTCAAAGGTTAATAAATGAAGAGGATGGAGGAATGCATAGGCGACATGCATCACCTTCCGTTCGTGATAGGGGTGCACTGATGTCAATAACTAGTCAAGCTTCAGCTCCCTCTAATCTAACTGGTTATGGAACTTCTGCTATTGTTGCAATGGACCGAAGTTCAAGTTTATCATCAGGGACTTCTATCAACTGTGGTGTTCTTCTTTCACAAGCCAAGTCACTTGGGAAAGGTACTGAACGTAGTTTGGAAAGTGTATTGCATGCAAGCAAACAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGTTTGGATTTGTCTGATAAGCATGGTTCATCTGCTCTCCGTGCAGGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCTGCTGTCACAGCATCTAATCATCTGACTAGCTCTTTAACGACAGAATCAACTGCTTCTGGTGTCAATAAAGGTAGTAACCGAAATGGTTGTTTGGGTTTATCTGACATAATCACCCAAATTCAAGCTTCCAAAGATTCAGGCAGGTTATCGTATAATGCTAATGTTGGTATTGAGCCTTTGTCAGCATTTTCATCATACTCAAGTAAAAGGGCTActgaaaaattacaagaaagaaATTCTGTTGATGAAAACAATGGCATCAGGGAGACTAGACGGTATATGAACCCCAGCATAGATAGGCAGTATATGGATACCCGTTATAGAGATGGCAACTTTAGGGATCCACAGAATAGTTATGTGCCTAATTTCCAGAGGCCACTATTGAGAAAGAATGTAGCTGGACGTGTGTCTGCTGGCAGCAGGAGGAGTTTTGATGATAGCCAATTATCTCTTGGAGAGATGTCAAATTATGCAGATGGACCAGCATCTCTTCATGAAGCTCTGAGTGAAGGACTTAGCTTGGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCACTCTTTGTTGCAGCAAGGTCAAAAGCAAGAAGTAGTTCAGAATTTTGAGAAGGTGATGAAGTTGTTTTTTCAGCACTTGGATGATCCTCATCATAAAGTTGCACAGGCTGCTCTGTCCACACTGGCAGATATTATTACGGCATGCCGAAAGCCCTTTGAGGGTTACATGGAACGAATGTTACCCCATGTTTTTTCTCGGTTAATTGACCCCAAAGAGCTAGTTAGGAAAGCATGCTCAATGAATTTGGATGTTGTTAGCAAAACATACAGCATAGATTCTCTCTTACCTGCATTGCTTCGATCACTAGATGAACAAAGGTCTCCAAAGGCAAAATTGGCTGTTATAGAGTTTGCAATAAGTTCCTTTAACAAGCATGCAATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCCAAGTTAGTCCCATTGGTTCatgataaaaatacaaaacttaaaGAAGCAGCTATTACATGCATTATATCAGTGTATTCTCACTTTGATTCATCTgcagttttgaattttattcttaatttgtcAGTTGATGAACAAAATTCTTTGAGACGAGCCCTTAAACAGCACACCCCTCGCATTGAAGTAGACTTAATGAATTATCTGCAGAATAAGAAAGAGCGACGTTCTAAGTCTTCATACGATCCATCTGATGTTGTGGGAGCATCCTCTGAAGAGGGATATGCTGGTTTGTCCAGGAAAGGTCATTACATTGGTAGGTATTCTGCTGGTTCCCTGGATAGTGATGGTGGCAGGAAGTGGACTTCCCAAGATTCCACCCTGATTGAAGCCAGTCTTGGTCAGGCTGCTTCTGATGAAACTGACGAACATACTGATTCTAATAGTggtatttttggtttaaaaactAAAGATCTAGCTTACACAGTCAATTCAATGGGTCAAAACTTTGGCTTTCAAACTAGCCAGGTAGGACATATGGACAGTAGCATGAATTTTGAAGGTCTATCATCTGATCTGGATGTTAATGGTCTGATGTCATCAGAACATTTAAATATTGCTGAAGACTTTGGACATGACAAAGAACATCCTTCTGAATTGAACCATAATCATCAGTCAGCTGAAGGTGTGAAGATAAACTACGTGACAGACACTGTACCCCGCATTCCTCAGATTCTTCATATGATATGCAGTGGGGGTGATGGAAGCCCTATTTCAAACAAGCGGACTGCACTTCAACAGCTAGTTGAAGTGTCTATAGCTAATGATCACTCTGTTTGGACCCTGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAATCAAAGAGCTTGCTCTTTCTTTGATAGTTGAAATGGTTAAAAATCAGAAAGATGCCATGGAAAATTCAGTTGAGATTGTAGTTGAAAAGCTGCTTAATGTTACGAAGGATATTGTTCCCAAGGTTTCAAACGAAGCAGAGCACTGCCTCACCATTGTTTTATCTCAGAATGATCCATTCAGATGTTTAAGTGTTATTGTCCCTCTACTGGTTACCGAGGATGAGAAAACTCTTGTCACTTGTGTAAATTGCTTGACAAAGCTCGTGGGGCGGCTCTCTCAGGAGGAACTGATGGCTCAGTTACCCTCTTTTCTGCCTGCTTTGTTTGAAGCTTTTGGAAACCAGAGTGCTGATGTTCGCAAGGTACTTAGGTCTTTTGTCTGCATCCATGAATTAATGGTCCTCCTTTTCATGTATGTAATGAAATTTTTGTGGTAA 4212 0.4276 MEEALELARAKDAKERMAGVERLHEVLEASRRSLSAGEVTSLVDCCLDLLKDSSFKVSQGALQALDSAAVRAGDHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTILVERAGSFAWTCKSWRVREEFARTVTSAIGLFSSTELPLQRAILPPILQLLNDLNPAVREAAILCIEEMYTQAGSQFRDELQRHNLPSSLVKAINARLEGIQPKVHSSDGISSGYIAGEIKPVGVNPKKSSPKAKSSSRESSLFGAGEGDVTEKVIDPIKVYSEKELIRQIDKIASTLVPEKDWSIRIAAMQRIEGLVLGGAADYPCFCGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKDLLGDFEACAELFIPVLLKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRARCCDYALLILEHWPDAAEINRSADLYEDMIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRLINEEDGGMHRRHASPSVRDRGALMSITSQASAPSNLTGYGTSAIVAMDRSSSLSSGTSINCGVLLSQAKSLGKGTERSLESVLHASKQKVSAIESMLRGLDLSDKHGSSALRAGVDPPSSRDPPFPAAVTASNHLTSSLTTESTASGVNKGSNRNGCLGLSDIITQIQASKDSGRLSYNANVGIEPLSAFSSYSSKRATEKLQERNSVDENNGIRETRRYMNPSIDRQYMDTRYRDGNFRDPQNSYVPNFQRPLLRKNVAGRVSAGSRRSFDDSQLSLGEMSNYADGPASLHEALSEGLSLGSDWSARVAAFNYLHSLLQQGQKQEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIITACRKPFEGYMERMLPHVFSRLIDPKELVRKACSMNLDVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNPEGAANIGILKLWLAKLVPLVHDKNTKLKEAAITCIISVYSHFDSSAVLNFILNLSVDEQNSLRRALKQHTPRIEVDLMNYLQNKKERRSKSSYDPSDVVGASSEEGYAGLSRKGHYIGRYSAGSLDSDGGRKWTSQDSTLIEASLGQAASDETDEHTDSNSGIFGLKTKDLAYTVNSMGQNFGFQTSQVGHMDSSMNFEGLSSDLDVNGLMSSEHLNIAEDFGHDKEHPSELNHNHQSAEGVKINYVTDTVPRIPQILHMICSGGDGSPISNKRTALQQLVEVSIANDHSVWTLYFNQILTVVLEVLDDSDSSIKELALSLIVEMVKNQKDAMENSVEIVVEKLLNVTKDIVPKVSNEAEHCLTIVLSQNDPFRCLSVIVPLLVTEDEKTLVTCVNCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKVLRSFVCIHELMVLLFMYVMKFLW 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2294 1403 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Ssu7g2294 1403 SUPERFAMILY ARM repeat 289 1384 IPR016024 -
Ssu7g2294 1403 Gene3D - 1 223 IPR011989 -
Ssu7g2294 1403 Gene3D - 268 508 IPR011989 -
Ssu7g2294 1403 PANTHER PROTEIN, PUTATIVE-RELATED 28 1392 - -
Ssu7g2294 1403 MobiDBLite consensus disorder prediction 243 262 - -
Ssu7g2294 1403 MobiDBLite consensus disorder prediction 630 652 - -
Ssu7g2294 1403 SUPERFAMILY ARM repeat 2 403 IPR016024 -
Ssu7g2294 1403 Gene3D - 1201 1401 IPR011989 -
Ssu7g2294 1403 Gene3D - 798 1016 IPR011989 -
Ssu7g2294 1403 PANTHER CLASP 28 1392 - -
Ssu7g2294 1403 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Ssu7g2294 1403 SMART TOG_3 3 224 IPR034085 -
Ssu7g2294 1403 SMART TOG_3 283 515 IPR034085 -
Ssu7g2294 1403 SMART TOG_3 777 1020 IPR034085 -
Ssu7g2294 1403 Pfam CLASP N terminal 803 991 IPR024395 -
Ssu7g2294 1403 Pfam CLASP N terminal 286 501 IPR024395 -
Ssu7g2294 1403 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Ssu7g2294 1403 Coils Coil 10 30 - -
Ssu7g2294 1403 MobiDBLite consensus disorder prediction 608 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2294 Ssu-Chr7 44988097 45001933 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2294 K16578 - gmx:100801377 2457.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2294 7 44988097 45001933 Ssu7g2294 7 44988097 45001933 ECH
Ssu4g1144 4 18190888 18205430 Ssu7g2294 7 44988097 45001933 PCT